Gene
RNA
| Item | Value |
|---|---|
| gene id | G458821 |
| gene name | NA |
| gene type | non-coding |
| species | grasscarp (Ctenopharyngodon idella) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | CI01000321 |
| NCBI id | null |
| chromosome length | 5206101 |
| location | 3134420 ~ 3134629 (-) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU526715 | True | 210 | lncRNA | 0.35 | 1 | 3134420 | 3134629 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| CI01000321_03067511_03106086 | GRB10B, GRB10, GRB10A | coding | downstream | 28334 | 3066740 ~ 3106086 (-) |
| CI01000321_03044953_03048124 | NA | coding | downstream | 86296 | 3044880 ~ 3048203 (-) |
| CI01000321_03028470_03033496 | NA | coding | downstream | 99529 | 3028397 ~ 3034891 (-) |
| CI01000321_02739755_02767802 | NUDCD1 | coding | downstream | 366452 | 2739482 ~ 2767968 (-) |
| CI01000321_02702079_02702974 | NA | coding | downstream | 431446 | 2701859 ~ 2702974 (-) |
| CI01000321_03196013_03203541 | NA | coding | upstream | 61321 | 3195950 ~ 3203688 (-) |
| CI01000321_03319309_03319938 | NA | coding | upstream | 183974 | 3318603 ~ 3321335 (-) |
| CI01000321_03334483_03334797 | NA | coding | upstream | 199489 | 3334118 ~ 3334797 (-) |
| CI01000321_03386687_03389140 | NA | coding | upstream | 251416 | 3386045 ~ 3389140 (-) |
| CI01000321_03389183_03396898 | NA | coding | upstream | 254554 | 3389183 ~ 3396898 (-) |
| G458820 | NA | non-coding | downstream | 3057 | 3131147 ~ 3131363 (-) |
| G458814 | NA | non-coding | downstream | 82066 | 3051772 ~ 3052354 (-) |
| G458777 | NA | non-coding | downstream | 180512 | 2953067 ~ 2953908 (-) |
| G458756 | NA | non-coding | downstream | 239678 | 2893806 ~ 2894742 (-) |
| G458752 | NA | non-coding | downstream | 244048 | 2887067 ~ 2890372 (-) |
| G458829 | NA | non-coding | upstream | 12121 | 3146750 ~ 3147074 (-) |
| G458830 | NA | non-coding | upstream | 15944 | 3150573 ~ 3151271 (-) |
| G458833 | NA | non-coding | upstream | 21575 | 3156204 ~ 3158185 (-) |
| G458838 | NA | non-coding | upstream | 35074 | 3169703 ~ 3169944 (-) |
| G458840 | NA | non-coding | upstream | 49031 | 3183660 ~ 3183927 (-) |
| G458802 | NA | other | downstream | 42493 | 3088115 ~ 3091927 (-) |
| CI01000321_02282824_02284376 | MBPA | other | downstream | 849909 | 2282238 ~ 2284934 (-) |
| CI01000321_01451689_01453423 | NPY | other | downstream | 1681113 | 1451194 ~ 1453530 (-) |
| G458122 | NA | other | downstream | 2098272 | 1032063 ~ 1036148 (-) |
| G458859 | NA | other | upstream | 337252 | 3471881 ~ 3489534 (-) |
| G458957 | NA | other | upstream | 526997 | 3661626 ~ 3666999 (-) |
| CI01000321_03737149_03737996 | TMEM238A | other | upstream | 601827 | 3736456 ~ 3738096 (-) |
| G459011 | NA | other | upstream | 675498 | 3810127 ~ 3816395 (-) |
| G459803 | NA | other | upstream | 1884337 | 5018966 ~ 5025886 (-) |
