G457772


Basic Information

Item Value
gene id G457772
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000321
NCBI id null
chromosome length 5206101
location 3293130 ~ 3293378 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU525475
CGCACATGAATGACTCATTTTCTAATGCTAATCGCTGTTAGAAAAATGTGCTTTCATATTTGTATATCATTAATCTTAAGGTACTTCTAAAGAGAATGCGGAATGGATGAATGATGAGAACATCACTATTTACACACTACTAGTCAAAATTTTTATATTAAGGTTCATTTTTAATGCAAGTTTAGTAGACAAATATAAATTATTTATTATTAGCATTTTTGATCCCAACATAATTCCCATATTACTTCC

Function

NR:

description
PREDICTED: uncharacterized protein LOC106565965 isoform X13

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU525475 True 249 lncRNA 0.28 1 3293130 3293378

Neighbor

gene id symbol gene type direction distance location
CI01000321_03258454_03289329 ARHGEF1A, ARHGEF2 coding upstream 3697 3258322 ~ 3289433 (+)
CI01000321_03245667_03250403 NA coding upstream 41573 3245667 ~ 3251557 (+)
CI01000321_03212011_03226326 NA coding upstream 66731 3211861 ~ 3226399 (+)
CI01000321_03191343_03195029 SSR2 coding upstream 97994 3191343 ~ 3195136 (+)
CI01000321_03186100_03187507 IRGF3, IRGF1 coding upstream 105467 3185464 ~ 3187663 (+)
CI01000321_03294654_03298670 NA coding downstream 1092 3294470 ~ 3298801 (+)
CI01000321_03303567_03306121 XTM4 coding downstream 9900 3303278 ~ 3306121 (+)
CI01000321_03324526_03332195 NA coding downstream 31148 3324526 ~ 3333862 (+)
CI01000321_03348458_03349276 NA coding downstream 54996 3348374 ~ 3349487 (+)
CI01000321_03351289_03352346 NA coding downstream 57606 3350984 ~ 3352677 (+)
G457771 NA non-coding upstream 2 3292907 ~ 3293128 (+)
G457766 NA non-coding upstream 88009 3204735 ~ 3205121 (+)
G457765 NA non-coding upstream 89524 3201738 ~ 3203606 (+)
G457735 NA non-coding upstream 134934 3156613 ~ 3158196 (+)
G457664 NA non-coding upstream 247489 3044727 ~ 3045641 (+)
G457773 NA non-coding downstream 26190 3319568 ~ 3320094 (+)
G457775 NA non-coding downstream 47142 3340520 ~ 3340744 (+)
G457780 NA non-coding downstream 91055 3384433 ~ 3448259 (+)
G457726 NA non-coding downstream 108052 3401430 ~ 3403897 (+)
CI01000321_00815160_00819665 NA other upstream 2470283 815160 ~ 819749 (+)
G456774 NA other upstream 2866105 426083 ~ 427025 (+)
CI01000321_03795430_03804685 SHISA7B, SHISA7 other downstream 495940 3792915 ~ 3805511 (+)
CI01000321_04013470_04014515 CACNG8 other downstream 713248 4013468 ~ 4015412 (+)
G459303 NA other downstream 1192019 4485397 ~ 4488552 (+)
CI01000321_04515562_04517953 MRPS21 other downstream 1222156 4515534 ~ 4518187 (+)
CI01000321_04748037_04748315 DPM3 other downstream 1454034 4747650 ~ 4749579 (+)

Expression


Co-expression Network