G457773


Basic Information

Item Value
gene id G457773
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000321
NCBI id null
chromosome length 5206101
location 3319568 ~ 3320094 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU525476
ACTTACTGTTCACAGCAGCCCACTCCAAAAGGCTCGAAACACACACACTGGAAACATTCGTCATTTATCCAGGCCTCGCCGATGTCGAAAACACGGCCGTTGTGTTCACAGCTGGCTGCAGGGAAAAGTTTACCTTTGGCGTTGAAGTAGCATTCTCCACTGCTCGATACTCCATGACAGAGCTGGAGGATGTTCACCACACAAAACACAGCTAGTAAAACGTTCATCTCGCTTGTCTGCATGTCTAGAAGAAAAAATAGAGGGTAAATGAGCAAATGAACATTTAATTTGAATGATAGGATTCAGTTACTGTGAGCTACTGATGATATCTTTGTAATTAAAGGGATAGTTCACCCAAAAATTTTAATTCTGTCATCATTTAC

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU525476 True 383 lncRNA 0.42 2 3319568 3320094

Neighbor

gene id symbol gene type direction distance location
CI01000321_03303567_03306121 XTM4 coding upstream 13447 3303278 ~ 3306121 (+)
CI01000321_03294654_03298670 NA coding upstream 20767 3294470 ~ 3298801 (+)
CI01000321_03258454_03289329 ARHGEF1A, ARHGEF2 coding upstream 30135 3258322 ~ 3289433 (+)
CI01000321_03245667_03250403 NA coding upstream 68011 3245667 ~ 3251557 (+)
CI01000321_03212011_03226326 NA coding upstream 93169 3211861 ~ 3226399 (+)
CI01000321_03324526_03332195 NA coding downstream 4432 3324526 ~ 3333862 (+)
CI01000321_03348458_03349276 NA coding downstream 28280 3348374 ~ 3349487 (+)
CI01000321_03351289_03352346 NA coding downstream 30890 3350984 ~ 3352677 (+)
CI01000321_03361065_03369574 PIP5K1AA coding downstream 40971 3361065 ~ 3369574 (+)
CI01000321_03375884_03385622 PSMD4, PSMD4A, PSMD4.L coding downstream 53339 3373433 ~ 3385854 (+)
G457772 NA non-coding upstream 26190 3293130 ~ 3293378 (+)
G457771 NA non-coding upstream 26440 3292907 ~ 3293128 (+)
G457766 NA non-coding upstream 114447 3204735 ~ 3205121 (+)
G457765 NA non-coding upstream 115962 3201738 ~ 3203606 (+)
G457735 NA non-coding upstream 161372 3156613 ~ 3158196 (+)
G457775 NA non-coding downstream 20426 3340520 ~ 3340744 (+)
G457780 NA non-coding downstream 64339 3384433 ~ 3448259 (+)
G457726 NA non-coding downstream 81336 3401430 ~ 3403897 (+)
G457732 NA non-coding downstream 95154 3415248 ~ 3423378 (+)
CI01000321_00815160_00819665 NA other upstream 2496721 815160 ~ 819749 (+)
G456774 NA other upstream 2892543 426083 ~ 427025 (+)
CI01000321_03795430_03804685 SHISA7B, SHISA7 other downstream 469224 3792915 ~ 3805511 (+)
CI01000321_04013470_04014515 CACNG8 other downstream 686532 4013468 ~ 4015412 (+)
G459303 NA other downstream 1165303 4485397 ~ 4488552 (+)
CI01000321_04515562_04517953 MRPS21 other downstream 1195440 4515534 ~ 4518187 (+)
CI01000321_04748037_04748315 DPM3 other downstream 1427318 4747650 ~ 4749579 (+)

Expression


Co-expression Network