G457726


Basic Information

Item Value
gene id G457726
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000321
NCBI id null
chromosome length 5206101
location 3401430 ~ 3403897 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU525428
AGGAAAAAATAAGTGATGTCATTGACCAATGTACTAACAATATATGTGTATAACAAGGATAGTCATTCTCATTGGTACATGCTGTTTTTATTAAGCTTTATATTACATAGTCTACATCTGTAGCTACATACATGCAGTACTAATGGTATATTTCACTCTTTACCTTTACACATTCAATACTTTCATTTCTGTAAGCAAAGTGAAAAAGTCAATCCAATCATGTTTTTATGAGACCTCATTCTTATGCACTTGTATTAATGCCCTCCCAGATTGTCTCCAGTTGCTTTTGGACATGAGAGACATAGGGCTCAAACCAATTTTGTAGCTCCTCTGCCTTATCCTTAAGAGTGTTACGCATATTTTCTGTGGTCTTCTCAAATTTCTCTTTGAGGTCCTGAATTTGTGATTCCAGTTTCTCTTTTATTCCTTCACACTGGCTTCTCAGCAGTTCTCCCAGAGTTGACAGCTTCTCTTCAGCACGCTGATGCATTGCAGTGAAGTAAGGCTCAAGACGATCCTTCACATCCTCCATACTCTGAGCAGCACGAGAACGAACCTCCGCAAAGTATGTTTCCATTTTCCTTTAGATCAGAGGGACATTCAGAAAAATTGCTCAAAATTTAGGTTTTCATAGAATATTGTAGTATAACTTTATATATGCAATTTTTTATAAAATATATTTTGTAAATGTATATACAAGTTTTTTTTATTTTTATTTTTTTTATCTAAAAACGTTGTTGCATAGTGCCTGCAACCCCTTCATCCGTGACTTATTCACGATACAGCACTAGCCTCGAGTACCTTATTGCTTTTATGAAACGGTTGCCACACAATACAAATATTAAAGCCAAAAATATGTATCAATGGAACTTTCATGAAGTAAACTTTCACTAAAAGCCTTCCTTCTGCCGGAAAAAATAGTCCCTGACCGTGAACAGCAACTGAAGTTACATTATTACGCCATTAGATGGCGGCAAAGACTGTCTTTATGAGTGTGCTAGTCAGTAGCGAAGACTTTTACATTGAAAAGACTGAATTGTTACGAACACGTAACAAGACACAACTGACAAATGCTTTGACTAGCGCTGTCAGTCACGGGAAAACCCCTTAACTGTTAAAAGGACAAGATAATACATTTATTATGAACATAGGACTGACTTGAGAGAAAATGCTAAATCTAAATGCAGGTAATAAACTCTCTCACTCAATCTCTTTCTCACAGTACTCTTCTACACAATACAGTAAGCTTCAGTGAACAATATCAACTGAGAACGAACAGTTTACATTGCGAAGAGTGGTTGCTAAGGGTGTTGTGTAGTGATACACAGAACCGTTGTGTGAAGCGGTCATAGCCGTGGTTTATCGTGAATAAAACACAGCTATTGACCAATCAGAATCAATCACAGGAACTAACCGCTTTATAATTAAGTTTAATACCATGACTTACTTGTTGATCTCTTGGATGTCCTTGTTAAAACGTTTCCTTAATTTCTTGGCATAGGTGTTGACTCTGTTCTTGACATCTTCAGCGTTCTGTTGCACCATAGTCTGGAGCTCCTGGTTGTATTCAGTGACGCGATCCCTAGCTTCTTCCATGTGTGTGCGGAGTTTACTGGCCAGCAGTTGCAAATCTTCATTGAATTTTTGGGCAGTCTCCTGCGCATAGGGGCCCAGTTTGGAGTGCAAGTCATCTTTATACATTTGCAGCTCCATCATGGTGTCAACGATCAGTGTCTAATTCTCTGCCGAGCTGGGTGGCCTTGATGTTGTCCCTCATCTCCTCAGCCCTAGAGGTCAGCTCAGACACACGGTTCCAGAACTGATCCACTGCCTCTTCCCAGCGGTTCTTTGGCTCATCCTGAAACAGGAAGCGCCCCTGGCAGCCTGAATTATAGCGAGAGCAAGGATTACAGCCACAAACTTCATGATTGGTTTTGGACAGTACACCAGACAGATCTTCCAATGTGTTCTGTAATGAGAGTTTTTGAAGCAGCTGGTATTTATATGACTTGGATCACAGTCATGTTAATAGCCATAATGTGACTATGAACAGGTGAATTGGCAGC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU525428 True 2066 lncRNA 0.39 3 3401430 3403897

Neighbor

gene id symbol gene type direction distance location
CI01000321_03375884_03385622 PSMD4, PSMD4A, PSMD4.L coding upstream 15576 3373433 ~ 3385854 (+)
CI01000321_03361065_03369574 PIP5K1AA coding upstream 31856 3361065 ~ 3369574 (+)
CI01000321_03351289_03352346 NA coding upstream 48889 3350984 ~ 3352677 (+)
CI01000321_03348458_03349276 NA coding upstream 51943 3348374 ~ 3349487 (+)
CI01000321_03324526_03332195 NA coding upstream 67568 3324526 ~ 3333862 (+)
CI01000321_03472129_03487677 SLC9A3.2 coding downstream 67343 3471240 ~ 3487947 (+)
CI01000321_03490261_03505373 SLC9A3.1 coding downstream 85190 3489087 ~ 3505473 (+)
CI01000321_03532268_03545406 TEKT2 coding downstream 128096 3531993 ~ 3547559 (+)
CI01000321_03550354_03554714 NA coding downstream 146125 3550022 ~ 3555302 (+)
CI01000321_03561216_03562202 NA coding downstream 154717 3558614 ~ 3562292 (+)
G457775 NA non-coding upstream 60686 3340520 ~ 3340744 (+)
G457773 NA non-coding upstream 81336 3319568 ~ 3320094 (+)
G457772 NA non-coding upstream 108052 3293130 ~ 3293378 (+)
G457771 NA non-coding upstream 108302 3292907 ~ 3293128 (+)
G457732 NA non-coding downstream 11351 3415248 ~ 3423378 (+)
G457797 NA non-coding downstream 104072 3507969 ~ 3572127 (+)
G457842 NA non-coding downstream 227880 3631777 ~ 3635480 (+)
G457859 NA non-coding downstream 288984 3692881 ~ 3696205 (+)
G457872 NA non-coding downstream 318852 3722749 ~ 3732110 (+)
CI01000321_00815160_00819665 NA other upstream 2578583 815160 ~ 819749 (+)
G456774 NA other upstream 2974405 426083 ~ 427025 (+)
CI01000321_03795430_03804685 SHISA7B, SHISA7 other downstream 385421 3792915 ~ 3805511 (+)
CI01000321_04013470_04014515 CACNG8 other downstream 602729 4013468 ~ 4015412 (+)
G459303 NA other downstream 1081500 4485397 ~ 4488552 (+)
CI01000321_04515562_04517953 MRPS21 other downstream 1111637 4515534 ~ 4518187 (+)
CI01000321_04748037_04748315 DPM3 other downstream 1343515 4747650 ~ 4749579 (+)

Expression


Co-expression Network