Gene
RNA
| Item | Value |
|---|---|
| gene id | G457797 |
| gene name | NA |
| gene type | non-coding |
| species | grasscarp (Ctenopharyngodon idella) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | CI01000321 |
| NCBI id | null |
| chromosome length | 5206101 |
| location | 3507969 ~ 3572127 (+) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU525508 | False | 7971 | lncRNA | 0.35 | 5 | 3507969 | 3572127 |
| TU525512 | False | 6018 | lncRNA | 0.36 | 6 | 3517093 | 3572127 |
| TU525513 | False | 6153 | lncRNA | 0.36 | 6 | 3540803 | 3572127 |
| TU525514 | False | 2215 | lncRNA | 0.36 | 2 | 3552510 | 3565189 |
| TU525507 | False | 6378 | lncRNA | 0.36 | 3 | 3562804 | 3572127 |
| TU525506 | True | 4018 | lncRNA | 0.36 | 2 | 3567989 | 3572127 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| CI01000321_03490261_03505373 | SLC9A3.1 | coding | upstream | 2496 | 3489087 ~ 3505473 (+) |
| CI01000321_03472129_03487677 | SLC9A3.2 | coding | upstream | 20022 | 3471240 ~ 3487947 (+) |
| CI01000321_03375884_03385622 | PSMD4, PSMD4A, PSMD4.L | coding | upstream | 122115 | 3373433 ~ 3385854 (+) |
| CI01000321_03361065_03369574 | PIP5K1AA | coding | upstream | 138395 | 3361065 ~ 3369574 (+) |
| CI01000321_03351289_03352346 | NA | coding | upstream | 155428 | 3350984 ~ 3352677 (+) |
| CI01000321_03597314_03599713 | LIM2, LIM2.4, MGC84384, LIM2.L, LIM2.5 | coding | downstream | 24219 | 3596346 ~ 3599962 (+) |
| CI01000321_03650761_03655489 | NA | coding | downstream | 77239 | 3649366 ~ 3655509 (+) |
| CI01000321_03674424_03676748 | NA | coding | downstream | 102297 | 3674424 ~ 3677004 (+) |
| CI01000321_03680978_03683234 | SBK2 | coding | downstream | 108851 | 3680978 ~ 3683679 (+) |
| CI01000321_03702229_03709660 | NA | coding | downstream | 129961 | 3702088 ~ 3709808 (+) |
| G457780 | NA | non-coding | upstream | 59710 | 3384433 ~ 3448259 (+) |
| G457732 | NA | non-coding | upstream | 84591 | 3415248 ~ 3423378 (+) |
| G457726 | NA | non-coding | upstream | 104072 | 3401430 ~ 3403897 (+) |
| G457775 | NA | non-coding | upstream | 167225 | 3340520 ~ 3340744 (+) |
| G457842 | NA | non-coding | downstream | 59650 | 3631777 ~ 3635480 (+) |
| G457859 | NA | non-coding | downstream | 120754 | 3692881 ~ 3696205 (+) |
| G457872 | NA | non-coding | downstream | 150622 | 3722749 ~ 3732110 (+) |
| G457874 | NA | non-coding | downstream | 164319 | 3736446 ~ 3738593 (+) |
| CI01000321_03795430_03804685 | SHISA7B, SHISA7 | non-coding | downstream | 230879 | 3792915 ~ 3805511 (+) |
| CI01000321_00815160_00819665 | NA | other | upstream | 2685122 | 815160 ~ 819749 (+) |
| G456774 | NA | other | upstream | 3080944 | 426083 ~ 427025 (+) |
| CI01000321_04013470_04014515 | CACNG8 | other | downstream | 434499 | 4013468 ~ 4015412 (+) |
| G459303 | NA | other | downstream | 913270 | 4485397 ~ 4488552 (+) |
| CI01000321_04515562_04517953 | MRPS21 | other | downstream | 943407 | 4515534 ~ 4518187 (+) |
| CI01000321_04748037_04748315 | DPM3 | other | downstream | 1175285 | 4747650 ~ 4749579 (+) |
