G457842


Basic Information

Item Value
gene id G457842
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000321
NCBI id null
chromosome length 5206101
location 3631777 ~ 3635480 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU525569
TGGGAATGGAAATTAAGACAACAACACTTTCCTTAAGACCAGTGACAACATTGAGAAAGCATTGCTGCTTGTTAAACTGAAACTTCACTTACTCTACTGCAAGTTCAGCTCAATAAGTTGTGTTGCAGTCATTATGAAACTCTTTGGAGAAACAATGCTGATTATTGTTTACTTTTAGGTTTTCAACCACCAGTGGAAACTGGCTGACATTTTTAAAATGGTTTTGCCACCCAGTAAACAAAACATTCTGGTGACTTATATGGGACAAAATTTGAAAGAAAATTAGACTAAAATCAGACTGCAGTCACAACTACACTCAGGTCATTATAGGAAAAGAGAAATAAAGAAAAATCCACAGCAGTGCAGTTGCAGAAAACTCTGCATGTTTCATTGGTGTAGAGGAAGTGGCAAGAGACTAAAAAAAGAGGGCATCAATATAGGCATGTTTCATTTTCTCTACTATAAAAAGACACATAGGATGACCAACAAAGCGACACTTCTATGATTATCACTCTTTTGAAAAAAATATATCATACCATAAGGGTATGTTTACACGTGATGTACTAAAAGTGGAAATGTTTTTCCTTTGCATTTTTGAAAAGGTTTGTGTACAGATGCCAATGTTGTCAAAACGATCCCCGTATACACTGTAAATCCGATAAGTTCTGTATTGTAGACACCTCAAAAAATGTAAGTAAAGCAACTCAAAGATTATTTTAGTAGAACCTAAAAAAATATATATTATTTTTTGTAATTACAATCTAATTGAAATATTGAATAAACCAATACCTAATCTTTACAGTTAAGTGTTAGTTAGCAACAGCACACCAGTATGCACTAATGTAACCATCAAAGAAACTATCATTTACTTGCATTAACATGCCATATAGGTAGCCTTGATGTTTCACAGCCCATTCTCAACCTAACCACAGGCACTGCTCTTCACCACGGTGGTAACCCTACAAAATTTCAACATCACAGAAACACATTTAAATATCAAAATAACAGAACATTAAACAATAACACATCTTCCCCTGTATTAATCTTGTGCAAAAACACACAAAATACCACTCAATTTCAACATTTATTCTCCCTTACAGAGTGTGACGCAAAGCATGTTGGGAACTTGAAATCTGCTGCAACTCAGTTTGATGTTGAATGGATTCTTCTGATAACGTCGGTTACGCCGGTAACATCGGCAACGACGTGACATGGGTGACATCACTTTATATCGCTCAGTAAACTAAAAATAATAATTTAAGTATAAGGGTTTACTCAAAAATGTTGAGCTACACAAAAATAAAACTCCTCATTCAGAAAATGTCATTGTTTTAAGTTGCATCAATGATTTAACAGACTTTAATAGCAGCGTACTCAATCTTTATGAGTTAGTAGTACTGTTCGTGCTTACAGTGTACACAGATACGTGAAAACGACTAAAAACGCTGTATTCTGCATGCCAGGCCAGTAGTTGGCGATTTCACTTTGTAAAGTAACACCACATGCCTATAGACTAAACAAGTAATACACGTGCGCATGACATCACTATTTTAAAAAATTTGCGTTTTTGTAGTTTACAAGTAGTTTGCGTTTTCAGGCCCCCAAACGCTGTTGTCGTGTAAATGAATGACCAAGATGCATAAAAAGTTCAGTTTTTAGCTGAAAACTGTCATGTAAAATGACTCCTTAGTCATCAGAGAAGATAATCATGATAATGTGGGTCTATCGGAGAAGATAATATGGGGAGGCTGAGCTTCCTCAAAAATGCATTTAAAGGTTCAGTGTGTAAATTTTAGCGGCATCTAGGGGTGAGGTTGCGAATTGCTACAGTTGCCGACACAGGACAAAGATGTCATTGTCTGAGACAGCAGAGAGTAGCCAGTCAAGCAATGAGCAGTTTGTCCGTTTAGGGCTAATGTAGAAACACGCTTCAATTTTATGTTGGTTTGAATATCAAAAAGATAATGTGTTTTTGCGGCATTTAGATTTAACAATTTAGTAAATGCCTAAATAATCAAGAATAGATAAAACAGCATAATATTGTTAAATAGAATTATCGAATTTCATTCATTGAAGTAAGCAGGATGTCTTGATCAGAAAAGAGGAACACAAGTCTATGTTTCTTGCACTCTTATACGTAAGGCAGAAGTGAACTACACGAAACTCTAAATCAAGAGATTTTCTCAGGAAACCTGACCACAATTTATAGGCTTCATAGCGAGGAAATATATTATCTGGTAAACAGTGGCTTGCATGTTAACGCTAAGAGGTCACAGAAGCAGATTTGTGAAACACTGTTTCTAAATCTAAACAGTTTATCATGTACAAAAGCATATATCATTTCCCTACAAAAGTGTTAAATTATGAAAGCTAGTTATCAAGATCACACTTCATATATACATGATTGATTTTACTCTTACTGATTTTTTTTCTGTTATAAAATTCTAAAGATTATTTTACAATATAAAGGAGCATAATTGTCAGCAAAAAATCTTGATTTTTCACATTTGTCACCCTGGACCACAAAACCAGTCATAAGTCGCACGGGTATATGTCACACAATACATTGTATGGGTCAAAATTATAATTTTTCTTTTATGCCAAAAATCATTAGGATATAGTATATATCCTAATTGTGGTCTGTGCTATTTGTGGATATAAGTAAACATCATGTTCCATGAAGATATTTTGTAAATTTCCCACCGTAAATATATCAAAAAATTATTTTTGTGAGTGGATATGCATTGCTAAGGACTTCATTTGGACAATTTTAAAGGCGATTTTTTTTCGCACCCTCAGATTCCAGATTTTCAAATAGTTGTATCTCGGCCAAATATAGTCCTATCCAAACAAGCCATACATCAATGGGGAGCTTATTTATTCAGCTTTAAAATTTACCATTATGACTGGTTTTGTGGTCCAGGGTCACATTTTGATTTAATCAGTTAGACCGCCACTGCTAAAAAAAACTAAAGTAACATTACAATAAAGCTCTTTTAAACTTTACTCATGCCCTTGGGTCTACCTCGAACTAACCCTGTAGTCTTTGGAATGGAATTAGAGCTTTCTTCAGCAGTGCCTTCCTGGGATTGCACAGTGTGTCCTTCTTCCATTAATGCTCTGCGATAAATACTCGATAGGCTTTGTCTGAAGCTTTGCCTAATATTCAGTCCCATGCAGAAGTACAGCAGCGGGTTCACGCAGCTGTTGAAATACGCGAAGCCCTTAGCAATGGGAAGACCCACTTTGACTGCATGGCTCTTCTTGTCCACCATCTTGGCGAGGAGTAGGCAGTGGTAGGGTCCCCAACAAAAGAAAAAGGCACAGACCAGTGCAGCGAGAATCCGGAGAGGCCTTGATTTGCCAGAAAACCTTGTTCTGCGTATCCCAGCAGCAGCTAGAATGTAACAGCACAGGATGACCAGGAAGGGCAACAGGAATCCACACAAGAAGCGAATGCTGTATAAGGCATTCTTTGCTGTGTTGTCACCCTTTGATGCTTCTTTCACC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU525569 True 3510 lncRNA 0.36 2 3631777 3635480

Neighbor

gene id symbol gene type direction distance location
CI01000321_03597314_03599713 LIM2, LIM2.4, MGC84384, LIM2.L, LIM2.5 coding upstream 31815 3596346 ~ 3599962 (+)
CI01000321_03561216_03562202 NA coding upstream 69485 3558614 ~ 3562292 (+)
CI01000321_03550354_03554714 NA coding upstream 76475 3550022 ~ 3555302 (+)
CI01000321_03532268_03545406 TEKT2 coding upstream 84218 3531993 ~ 3547559 (+)
CI01000321_03490261_03505373 SLC9A3.1 coding upstream 126304 3489087 ~ 3505473 (+)
CI01000321_03650761_03655489 NA coding downstream 13886 3649366 ~ 3655509 (+)
CI01000321_03674424_03676748 NA coding downstream 38944 3674424 ~ 3677004 (+)
CI01000321_03680978_03683234 SBK2 coding downstream 45498 3680978 ~ 3683679 (+)
CI01000321_03702229_03709660 NA coding downstream 66608 3702088 ~ 3709808 (+)
CI01000321_03714795_03718845 NA coding downstream 78996 3714476 ~ 3719085 (+)
G457797 NA non-coding upstream 59650 3507969 ~ 3572127 (+)
G457780 NA non-coding upstream 183518 3384433 ~ 3448259 (+)
G457732 NA non-coding upstream 208399 3415248 ~ 3423378 (+)
G457726 NA non-coding upstream 227880 3401430 ~ 3403897 (+)
CI01000321_03351289_03352346 NA non-coding upstream 279100 3350984 ~ 3352677 (+)
G457859 NA non-coding downstream 57401 3692881 ~ 3696205 (+)
G457872 NA non-coding downstream 87269 3722749 ~ 3732110 (+)
G457874 NA non-coding downstream 100966 3736446 ~ 3738593 (+)
CI01000321_03795430_03804685 SHISA7B, SHISA7 non-coding downstream 167526 3792915 ~ 3805511 (+)
G457878 NA non-coding downstream 202827 3838307 ~ 3838532 (+)
CI01000321_00815160_00819665 NA other upstream 2808930 815160 ~ 819749 (+)
G456774 NA other upstream 3204752 426083 ~ 427025 (+)
CI01000321_04013470_04014515 CACNG8 other downstream 371146 4013468 ~ 4015412 (+)
G459303 NA other downstream 849917 4485397 ~ 4488552 (+)
CI01000321_04515562_04517953 MRPS21 other downstream 880054 4515534 ~ 4518187 (+)
CI01000321_04748037_04748315 DPM3 other downstream 1111932 4747650 ~ 4749579 (+)

Expression


Co-expression Network