G458957


Basic Information

Item Value
gene id G458957
gene name NA
gene type unknown
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000321
NCBI id null
chromosome length 5206101
location 3661626 ~ 3666999 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU526870
AAACACGCCATTTTTGTGTGTGCCTTTAAGTGCAAATGAGCAGCTGCTCCCAAGAAGAGGGCAAGAGCCTGTGTTAGCAGCTCCGAGTCCGATTACCTCACGCAGAATCACTGAAAATGTCAGAAACTGTTCAGCCTTTTGTGTTCAAACCCGAGTCGGACAATGACGGAGAGACTCAAGAAGAAGTGACAACATGTGAAACAGGACATTTCTGAATGATCCACACTACTGGATGTTTTGACTACATCAACGCTTTCCAAGAAGAGGGAGAAAATGGTGGCTTGAGCGGCTTCAACATGCTGTCTGTCAGAGATGATAACGTACCTAATTCATAACACGACGAGACCCTGAAGAACCTGTTCTGGATCGGGCCAATTACCATCAGCATGTTGACCTCCCAGACACCTCTGGACTTAACTGGAGGAATACCATCATTAGGTGGCTGGAGAGTGTCTTGCCCCAGTCGAGAGCACAGCCAGACCCAGAGCCTGAATCACCATTTTCGACTGAGGAGAATTCATGTGAGCCCCCTGCAGACAGAGAGCTACCACCTGCCACGACGCGTCAGCTAGAGCCCGAGGAGAAGAGGACAGAGCTGACCCTTGCCCTGGAAGTGGAGCTCCATCGTGAGTCTGACCAGGGGTGTGAGCCTGTGGCATCAGTGGAGTCTCCGGGGAGTCCTTGATGTGACGTACTCTGCTTCCGCCACAGACCTACGGGCCGTCCGCTGCGCTCCGTTCCTCCACCCCTATGGCTGCAGGGGGCTTCTCCTTCCCTTCGGCGTTGCTTCTGTCCTCAGTCACACCGGCTCTTCGGATACGCTGGCTCCATCTTTGACACTCGTCACCGCAGCATCGCCGAGGTCTCCAGTGTCTGCGACACTCGTTTCCATCGGCTCTCTGTCTGTGCTCATGGATCCATCGCCATCATTTCCTGCAGTCATCCACCAGCTGTCATCAGCCACGACACCATCTGGACTCCCCCCCACCTCGACTCTGCTGTGGCCTGTCGGCACTGGCAAGCTCTGGGTCTGTGCCAGCGAACTATCTCCACCATTGCCGCCAGGGGATCGTCGTCTTCTATCTGCCACCATCCTTCTGTCGACACCATATTCCATCACCATCCCTTTGCCACATCTTGTCACCACATCCACGTCCACCTCCAATCCCTTTCTCCCTCTGCTTTCCTCTGTTACTGCACGAGATCGCGCCTAGCCGGAGGGGGGAGTTATGTCAGTTATGTTGAGTTTGTCTTAGTTATCTTGGATTTTTAGTTTGTTTTTATTCATTCTCATGTGTTCCTTTATTTGACTTTCCCACCACTCCTTTGTTACCAGGGTCACCGTCATTGAGTTTGTATGGTTCAGCTGTTTTATTAATCATCTTGTTTGAGTTCCTATTTACGTTCCCTCATGTGAGAGTACGTTAATGTAGTACCCTCATGTTCATT

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU526870 True 1449 TUCP 0.52 3 3661626 3666999

Neighbor

gene id symbol gene type direction distance location
CI01000321_03634967_03638070 NA coding downstream 16586 3632865 ~ 3645040 (-)
CI01000321_03617970_03623187 NA coding downstream 37887 3617822 ~ 3623739 (-)
CI01000321_03603359_03605516 NA coding downstream 56036 3603302 ~ 3605590 (-)
CI01000321_03582914_03595600 USF2 coding downstream 65874 3582881 ~ 3595752 (-)
CI01000321_03563743_03572145 NA coding downstream 89481 3562881 ~ 3572145 (-)
CI01000321_03693751_03699051 NECP1, NECAP1 coding upstream 26752 3693751 ~ 3699051 (-)
CI01000321_03722066_03729777 RCVRN3 coding upstream 55009 3722008 ~ 3731500 (-)
CI01000321_03737149_03737996 TMEM238A coding upstream 69505 3736456 ~ 3738096 (-)
CI01000321_03786243_03791623 NA coding upstream 118535 3785534 ~ 3791943 (-)
CI01000321_03793750_03794395 NA coding upstream 125796 3792795 ~ 3794990 (-)
G458916 NA non-coding downstream 61657 3599489 ~ 3599969 (-)
G458905 NA non-coding downstream 192504 3468851 ~ 3469122 (-)
G458903 NA non-coding downstream 195762 3465575 ~ 3465864 (-)
G458902 NA non-coding downstream 197940 3463471 ~ 3463686 (-)
G458980 NA non-coding upstream 3198 3670197 ~ 3670421 (-)
G458954 NA non-coding upstream 5446 3672445 ~ 3678626 (-)
G458958 NA non-coding upstream 15578 3682577 ~ 3686715 (-)
G458984 NA non-coding upstream 33782 3700781 ~ 3701059 (-)
G459009 NA non-coding upstream 129309 3796308 ~ 3797461 (-)
G458859 NA other downstream 172092 3471881 ~ 3489534 (-)
G458802 NA other downstream 569699 3088115 ~ 3091927 (-)
CI01000321_03044953_03048124 NA other downstream 613423 3044880 ~ 3048203 (-)
CI01000321_02282824_02284376 MBPA other downstream 1377115 2282238 ~ 2284934 (-)
CI01000321_01451689_01453423 NPY other downstream 2208319 1451194 ~ 1453530 (-)
G459011 NA other upstream 143128 3810127 ~ 3816395 (-)
G459803 NA other upstream 1351967 5018966 ~ 5025886 (-)

Expression


Co-expression Network