G457859


Basic Information

Item Value
gene id G457859
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000321
NCBI id null
chromosome length 5206101
location 3692881 ~ 3696205 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU525590
GGTGGAAGACTATGGTACAAACTTTTTACATTTTTGTAAGGACAATAAATCAGCAAACTGTTGGACCTGGAGCCGAGGGACTTGATATCTGGTAACAGACAAAATGAGAAATCATATACATTTGAAATAGCAAATCCCAATTCAAATAACATTGGACCTCCATAAACAGTAATATGTTTGTATTTGTTTCCACGCTAAAAGCTAGGCTAGGCAGAAAGCATTTTAGCACGTCAATATTTTTCATAGACTGGTATGGCAAACGCTAATATTTTTGAGAATCATATTTGACAGAGATTATTAAAGAAAAATCACATGTGAAGCATTGTGCATTGTAGCTCTTTTGTATATTTTATTTTAGTTTAACACATAAATGACTCTGTTACTCTGATCTGTTACTCAAGTAAATGACAATATGGATATGTAATGGATATCTAGACATAATCCCTATATTTGAGGGACATAATTTTTCTACATTGTGGCCTTCAATCAATATTTTTGTATATTTATACTGTACATGTTTTATATATTCTTATGATATACAAGATGTTAAGCTCTTGACGTTTCCAGGCCTCATTTAAATTCTACACTTTCAATCCATCTCTGCCTTTTTAAACACTCAAACACACACACATATTCACTCCTCCAAAACCAAAGACGAACACATACAAGTTATGATAACAAAGTGGACACATCCAACACCTTGTGGACAAATGTAAAGATACTGAAACAGTCTTCAAAAAAACGTTACCATAAAGTTTCACATATTACGCTCATGGGATGTTCCTCTCCTTTTATACAATCTTTTTCATAACTTCATTTGGTTGATTTGTTTTAGAAGACCAACAAAACCCTTAATAGCCTATTTCTCACCTCTGTGCTCTGCTAAGATTAGCAGCTTTACATACAGCTTGCCTCTAATGTTCCATGCTATTATGCAGTATCTTTTAATTGCAGTAGTTCTGATGAAGGAATGGGAACAATAATGGAATGAAGGATGATGAAACTTTTTCAGAACTGGACCCAGTTCCCAGAAGAGGGTTCTTGGTGAGATGCTGGAGGAGGAACAGAGCTGTCAGAGCTGGGGTTTGACTGAACCACTGTATTAGAGTTACTGCTGTCCAGTTCTAATAAACATCCTAAGAGTAGGGGGAAAACCGGGAGATGAAGAAAAAAAAAAAAGAGAGAGAAAAACAAAGGTTATCAAGATATCTGTAAAATGTATTTGTGTGTTTGTCTGTATATGTCTGTGCATTTAGAGTGGGTGAGATATTAATAAAAATGAATTGTCAGACTCAGAATTCATATTTTACATAATTCATATATGGTTACGACACTGATGACGATGTAAATTGAAAAGCTATCTTTGGATTTGG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU525590 True 1373 lncRNA 0.34 2 3692881 3696205

Neighbor

gene id symbol gene type direction distance location
CI01000321_03680978_03683234 SBK2 coding upstream 9202 3680978 ~ 3683679 (+)
CI01000321_03674424_03676748 NA coding upstream 15877 3674424 ~ 3677004 (+)
CI01000321_03650761_03655489 NA coding upstream 37372 3649366 ~ 3655509 (+)
CI01000321_03597314_03599713 LIM2, LIM2.4, MGC84384, LIM2.L, LIM2.5 coding upstream 92919 3596346 ~ 3599962 (+)
CI01000321_03561216_03562202 NA coding upstream 130589 3558614 ~ 3562292 (+)
CI01000321_03702229_03709660 NA coding downstream 5883 3702088 ~ 3709808 (+)
CI01000321_03714795_03718845 NA coding downstream 18271 3714476 ~ 3719085 (+)
CI01000321_03739229_03740955 NA coding downstream 43024 3739229 ~ 3740990 (+)
CI01000321_03749658_03759359 U2AF2.S, U2AF2, U2AF2A, U2AF2B coding downstream 53453 3749658 ~ 3759645 (+)
CI01000321_03767896_03783640 CNOT3, CNOT3B coding downstream 71691 3767896 ~ 3783926 (+)
G457842 NA non-coding upstream 57401 3631777 ~ 3635480 (+)
G457797 NA non-coding upstream 120754 3507969 ~ 3572127 (+)
G457780 NA non-coding upstream 244622 3384433 ~ 3448259 (+)
G457732 NA non-coding upstream 269503 3415248 ~ 3423378 (+)
G457726 NA non-coding upstream 288984 3401430 ~ 3403897 (+)
G457872 NA non-coding downstream 26544 3722749 ~ 3732110 (+)
G457874 NA non-coding downstream 40241 3736446 ~ 3738593 (+)
CI01000321_03795430_03804685 SHISA7B, SHISA7 non-coding downstream 106801 3792915 ~ 3805511 (+)
G457878 NA non-coding downstream 142102 3838307 ~ 3838532 (+)
G459126 NA non-coding downstream 402816 4099021 ~ 4102339 (+)
CI01000321_00815160_00819665 NA other upstream 2870034 815160 ~ 819749 (+)
G456774 NA other upstream 3265856 426083 ~ 427025 (+)
CI01000321_04013470_04014515 CACNG8 other downstream 310421 4013468 ~ 4015412 (+)
G459303 NA other downstream 789192 4485397 ~ 4488552 (+)
CI01000321_04515562_04517953 MRPS21 other downstream 819329 4515534 ~ 4518187 (+)
CI01000321_04748037_04748315 DPM3 other downstream 1051207 4747650 ~ 4749579 (+)

Expression


Co-expression Network