G457874


Basic Information

Item Value
gene id G457874
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000321
NCBI id null
chromosome length 5206101
location 3736446 ~ 3738593 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU525606
TTAATTAGTAAAAAAATTTTGACTAATTTTTAATTAGTCAAAAATGGTCAAAACAATTTTTATTCATACAAAAGCCACGTGACCGCTATCAACTCTTGCCATAACATGAAATGTTCATGTTTGTCTCCACCTAGAGATCACATGAAGTACTGCAAATTATTGTACTCTGATTGGTGGGTCACGATTTGCGGTCTAAATACAAATAGGCCACTTGAAAATGTTCATTTAACAGACAAACAATACTGACAATTTGCTAAAAATGAATCCATTTTTTGATAACTAAAAATATAACTAAAACACACTTTATAGAGAATAAACACTGCTTTTGGCCATGAATTGCTAAAACAGAAAATAAATGTTAAAAATGTTGCATACATGTTAACACTAGTACAGTTTAATTTCTTGTAACAATTCGTGTAGTAACGTTCTTTCTGACCTTTGTTGTAGGCTATAGTAACTGAATAAACTACAATAGTAGCCTATTACATTAAAACATATTTAGATAAAAAGTACAATATAGGCCAAATGTTATTTAAGTACAACAGCTATTTACCTAAGCAGGGTGTAAGGTCAGGATATTCAGTTCGACAAATAAATTTTTTCTTTGAATCTCAATGTCCAAATCTGTAAGGCACAAAAATCTTCTTTTAAGGGAGTCTTTTTATATATAAAAAAATAGAAATGAGAAATAAAACGTCAAAAGTCAGGGTCCTCTGTGAACACGATGTGTACTATATATTTTCCTGCTGAGGTTGCGGGCCAAACGTTCCACGGCATTGCCAATTCCGCTCAGATCCTTTTGTTTTGGAATACCCTCAATGTTGCCACTATACCACATGACCCAACCGCCAAGTGATATCAGTACTAAGACGGCCCCAGTGTAGACAAGAAGGTCCCCGAAATCTCTCCCCTTCGTTTCCAGTGGCACAAAAAGCCCCACAAACAGGGCCGCAAAGCCAAAAATGTCGAAAATAACAGCAAAGCCCAGGGCCACTTTGCAGTGTTTGAGACCAGCACATGCCATGGTAACTTGATTCTCGGTATCTTCACTTCACGAATATTAAATATTTCATCGCTTTTCAGGTGTGGTTGAGTCAGGTATGGACTACAGTCTACCTGTTTGAAGCTGCTTCCGGACCCTCCCAGGCATGTTGATATTTGACACCACCGGAATCGGCCCTTTCAAACTTAAAACAGTTATTACGCTGTCATCACATCAGAAATCAAACAAAAAGAAACAAGGACTTCCTGCACTGTTTGATGGAGACCCCCTTTTTATGTATTATGAATTTACAGTAACTAACAATAATTAGCTAGACGTTATAACTAGCACCTAGCCTATACAACTAACAATATAACTACACAACGAACTATATAACTAACAATAATTCTGACGTTATAACTCTCAATTGCGACTTTATATCACGCATTCTGAATTTATAACACGCAATTCGAGTTTATATCTCGCATTTCTGAGAAAAAAAAGTCATAATTATCAATTAAGCAATTATCTTTGAAATTGTTTTATTATGTGGCAGAAACGAGCTTCCTTAATTTTATCTTAATTGTATTACCACGGATTCAAAATAGCCTACTGAGTCCTGAAAACTCTTTCTTTCTATTTGCATTAAAATACTGCTGTTTGGATCGCCTAATTCACTACATTAATTAAAATACTACATTGTTAGTTTAAATTATAGGGGACATAATTAAGTTAACGTTCTACATGTACTATATGCTATCTTTT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU525606 True 1747 lncRNA 0.35 2 3736446 3738593

Neighbor

gene id symbol gene type direction distance location
CI01000321_03714795_03718845 NA coding upstream 17361 3714476 ~ 3719085 (+)
CI01000321_03702229_03709660 NA coding upstream 26638 3702088 ~ 3709808 (+)
CI01000321_03680978_03683234 SBK2 coding upstream 52767 3680978 ~ 3683679 (+)
CI01000321_03674424_03676748 NA coding upstream 59442 3674424 ~ 3677004 (+)
CI01000321_03650761_03655489 NA coding upstream 80937 3649366 ~ 3655509 (+)
CI01000321_03739229_03740955 NA coding downstream 636 3739229 ~ 3740990 (+)
CI01000321_03749658_03759359 U2AF2.S, U2AF2, U2AF2A, U2AF2B coding downstream 11065 3749658 ~ 3759645 (+)
CI01000321_03767896_03783640 CNOT3, CNOT3B coding downstream 29303 3767896 ~ 3783926 (+)
CI01000321_03795430_03804685 SHISA7B, SHISA7 coding downstream 56708 3792915 ~ 3805511 (+)
CI01000321_03811184_03815473 ZNF865 coding downstream 71702 3810295 ~ 3815631 (+)
G457872 NA non-coding upstream 4336 3722749 ~ 3732110 (+)
G457859 NA non-coding upstream 40241 3692881 ~ 3696205 (+)
G457842 NA non-coding upstream 100966 3631777 ~ 3635480 (+)
G457797 NA non-coding upstream 164319 3507969 ~ 3572127 (+)
G457732 NA non-coding upstream 313068 3415248 ~ 3423378 (+)
G457878 NA non-coding downstream 99714 3838307 ~ 3838532 (+)
G459126 NA non-coding downstream 360428 4099021 ~ 4102339 (+)
G459178 NA non-coding downstream 497911 4236504 ~ 4236726 (+)
G459180 NA non-coding downstream 510013 4248606 ~ 4248923 (+)
CI01000321_00815160_00819665 NA other upstream 2913599 815160 ~ 819749 (+)
G456774 NA other upstream 3309421 426083 ~ 427025 (+)
CI01000321_04013470_04014515 CACNG8 other downstream 268033 4013468 ~ 4015412 (+)
G459303 NA other downstream 746804 4485397 ~ 4488552 (+)
CI01000321_04515562_04517953 MRPS21 other downstream 776941 4515534 ~ 4518187 (+)
CI01000321_04748037_04748315 DPM3 other downstream 1008819 4747650 ~ 4749579 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_013896 tmem238a coding NC_007130.7 CM002903.2 10331325 ~ 10333333 (+)
tiger barb (Puntius tetrazona) G133949 NA unknown NC_056717.1 CM032086.1 17283332 ~ 17284744 (-)