G457878


Basic Information

Item Value
gene id G457878
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000321
NCBI id null
chromosome length 5206101
location 3838307 ~ 3838532 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU525610
GCGATTTGTGGATCGGTCCAGGTTTTTCCGAATGCATCGCGATTCTCTCTTGAATCGATTCTGAGCTTAGTTATTAACAGCAGATGGCGCTCTAGGCTAGTTTTTAACCGCACTCTCAAATGCTCACGAAGAAGAGCGCTGAAGAGCGTTCATGTATTCGGCTGAACTTGCACCTTTAGAATGCTTTTGTGACTCGAGATTAATGTAAACACCCTTGTAATTCGCT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU525610 True 226 lncRNA 0.44 1 3838307 3838532

Neighbor

gene id symbol gene type direction distance location
CI01000321_03820289_03828024 DBP, DBPA coding upstream 9535 3820124 ~ 3828772 (+)
CI01000321_03811184_03815473 ZNF865 coding upstream 22676 3810295 ~ 3815631 (+)
CI01000321_03795430_03804685 SHISA7B, SHISA7 coding upstream 33572 3792915 ~ 3805511 (+)
CI01000321_03767896_03783640 CNOT3, CNOT3B coding upstream 54381 3767896 ~ 3783926 (+)
CI01000321_03749658_03759359 U2AF2.S, U2AF2, U2AF2A, U2AF2B coding upstream 78662 3749658 ~ 3759645 (+)
CI01000321_03898978_03936261 GRIN2DA coding downstream 60446 3898978 ~ 3936261 (+)
CI01000321_03937712_03954703 GRIN2D coding downstream 98900 3937432 ~ 3955589 (+)
CI01000321_03981145_03984891 NA coding downstream 142613 3981145 ~ 3984984 (+)
CI01000321_03989853_03999565 CACNG7 coding downstream 151197 3989729 ~ 4001036 (+)
CI01000321_04013470_04014515 CACNG8 coding downstream 174938 4013468 ~ 4015412 (+)
G457874 NA non-coding upstream 99714 3736446 ~ 3738593 (+)
G457872 NA non-coding upstream 106197 3722749 ~ 3732110 (+)
G457859 NA non-coding upstream 142102 3692881 ~ 3696205 (+)
G457842 NA non-coding upstream 202827 3631777 ~ 3635480 (+)
G459126 NA non-coding downstream 260489 4099021 ~ 4102339 (+)
G459178 NA non-coding downstream 397972 4236504 ~ 4236726 (+)
G459180 NA non-coding downstream 410074 4248606 ~ 4248923 (+)
G459181 NA non-coding downstream 410537 4249069 ~ 4249296 (+)
G459182 NA non-coding downstream 411699 4250231 ~ 4250465 (+)
CI01000321_00815160_00819665 NA other upstream 3015460 815160 ~ 819749 (+)
G456774 NA other upstream 3411282 426083 ~ 427025 (+)
G459303 NA other downstream 646865 4485397 ~ 4488552 (+)
CI01000321_04515562_04517953 MRPS21 other downstream 677002 4515534 ~ 4518187 (+)
CI01000321_04748037_04748315 DPM3 other downstream 908880 4747650 ~ 4749579 (+)

Expression


Co-expression Network