G459126


Basic Information

Item Value
gene id G459126
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000321
NCBI id null
chromosome length 5206101
location 4099021 ~ 4102339 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU527061
TTTTAAATACATAACATCATTACAATGCAATAAACTCCAGTAACCAATAAATATACCAATAATACAAATTTAAGTCTTATTATTTGAATTAGATGAGTACCGATAGACATAGAGGTACGATATAAAGTCAATCCCAAATAAATATGATAAATTAAATCACAATATCAGTATAATTACTAAACACAATTGTTTTGTTGGTGCGTGGACCAAAGGAAGCATTCTGCTAACACATTTTACATTGGAGCTTTTCTCTATGTAGCTGCATATTTATGCATAGGCTATATGTGTGTGACACATTCATCCGCTGTTGTGCATATTCTACATTACACCCCTTCTCATTTGCGTTACAATTAAGCTTTTAGCCTTTATCCAATGTGACGTCCTTAATAATAACACAGGATTGATGAGATGATGGTCCTCTTTAAATTTGACAGTTGTGTCACTTTTGAGTGATATATATATATATAAAAGGAACATTAGAGGACAGCATAGTTGAACGACTCTCCATAGCCCGCTTCACGCATGTATTTCTCCATGTCCAGCGGCTCAGACACTCGCAGCACTGCCTGATCATTGGCGCTTCTCTCTCCTGATTGGAGCTTTCTGATGAGCTCAGCCAATAGGACTCGCTTCTTTGGTTTCCACCGGCAGCAGGACTCGATATTGGAGCAGTTGGGGGGTCTCGTTATTGTGTTCTCTCTCTGTAGATGCTGCAGAAGTTCACTGGCCATGATGTTGGGAAAGGGGGGCTCTCCTGAGATTAGAAACAACGAGGTAAAAAGCTTTAGACAACTTAACAAATTGGTTATTTTTTTCCATAGAAGTGGAGCCCAAATACAACAATGCAATATTGAATGACAGACACACTCACCTAATGTCACCATCTCATAGAGCAAAATGCCAAAGGACCATCTATGGAGGATTAATGAAAAATGAATTCAATGTAAAGATCAAAGGTTAAAAAACACTGACTGAAAGTAAACTCACATGTCGCTACTTTGCTGGAGAGGTTGCCGTCCCAACACCTCTGGTGCTTGCCACTTTCTCATTTCTATATCTTCCACATCTCTTATAGAGCCTGCATTCATTTGCCTGTGGTATGCTGGGCCCAAACCCCACAGTTTGACTGACAGGTCCCGACCAACCAGGACACTTCGAGCCCTGACATTGCCATGGATGCAGTTCTTACTATGCAGATACTCCTGGAACATCAAGACCGGTTGTGTCAGGACAAGAACATGTGGTCTTGGGTATGACAATATATTTATTGTACGTTGTAAAATTAAAATGCTCCGGTTAAGTGCTCGTGACTGGCCATGATTAATGCATGCCAGAGTCAAACAAAGTAAAAGGCTCGTTATGATTGATGAAGTTGTCAGTATGTGCTGAAACTATGCCTGGGTGGCTCATAAAAACTCTCCATTCATATATACTTTCATACATTGACAGGCTTTCAGGATGGAACTGACTTGTCAATATGATTGTATAAATCTTGCAAGCAAATTTGTTATCTAACCAGAGCAGATCCAATCTGAGCGCCCATGGTAAAGATTCGTTTTTCAGTCATGTCACACGGTGGTGCCTGACCTGTGTGGTCCTGTGAAAGAGATTTACAGTCAGTCAAAACAAAGCTGAGGTTTAAACTTGTAGTTTGACTTTTAATCAATCCATTAAAAAATGAGATCATTAGTAATGACACAACCTCTATTTCATTCATTCGCAGGTGACCTCTAGTTCAAATAACTGATCAATTCATTCAGAGAGTTTAATGTCAATGTTTTACAGTAATTGCAAGACATTTCATGTTTATCTATCAAAATGGCAGTTTTGTGGCTTTTAGTTCCGGTCTGTTAGCTTTGAGGTCATTTATATGCTAGTGTACTCCTAAAATGTATAGTTTTAGGATTGGTATAATTTTTTTAAAGTATTTTTGAAAGAAGTCTCTTCTGCTCACCAAGGCTGCATTTATTTGATTAAAAATACAGTAAAAACAGTAATATTGAATATCATCAAAAAGTTGATTTAT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU527061 True 2026 lncRNA 0.38 2 4099021 4102339

Neighbor

gene id symbol gene type direction distance location
CI01000321_04082880_04096700 SLC2A3A coding upstream 1724 4082880 ~ 4097297 (+)
CI01000321_04063726_04074390 NA coding upstream 24528 4062691 ~ 4074493 (+)
CI01000321_04022562_04030274 CACNG8A coding upstream 68685 4022562 ~ 4030336 (+)
CI01000321_04013470_04014515 CACNG8 coding upstream 83609 4013468 ~ 4015412 (+)
CI01000321_03989853_03999565 CACNG7 coding upstream 97985 3989729 ~ 4001036 (+)
CI01000321_04120043_04140867 CLCN1A coding downstream 17704 4120043 ~ 4141293 (+)
CI01000321_04188431_04194328 ING4 coding downstream 86092 4188431 ~ 4194385 (+)
CI01000321_04204706_04214819 IFFO1A coding downstream 101737 4204076 ~ 4214861 (+)
CI01000321_04223582_04224440 NA coding downstream 121243 4223582 ~ 4225511 (+)
CI01000321_04274723_04276159 NA coding downstream 171506 4273845 ~ 4276225 (+)
G457878 NA non-coding upstream 260489 3838307 ~ 3838532 (+)
CI01000321_03795430_03804685 SHISA7B, SHISA7 non-coding upstream 293510 3792915 ~ 3805511 (+)
G457874 NA non-coding upstream 360428 3736446 ~ 3738593 (+)
G457872 NA non-coding upstream 366911 3722749 ~ 3732110 (+)
G457859 NA non-coding upstream 402816 3692881 ~ 3696205 (+)
G459178 NA non-coding downstream 134165 4236504 ~ 4236726 (+)
G459180 NA non-coding downstream 146267 4248606 ~ 4248923 (+)
G459181 NA non-coding downstream 146730 4249069 ~ 4249296 (+)
G459182 NA non-coding downstream 147892 4250231 ~ 4250465 (+)
G459183 NA non-coding downstream 148328 4250667 ~ 4250959 (+)
CI01000321_00815160_00819665 NA other upstream 3276174 815160 ~ 819749 (+)
G456774 NA other upstream 3671996 426083 ~ 427025 (+)
G459303 NA other downstream 383058 4485397 ~ 4488552 (+)
CI01000321_04515562_04517953 MRPS21 other downstream 413195 4515534 ~ 4518187 (+)
CI01000321_04748037_04748315 DPM3 other downstream 645073 4747650 ~ 4749579 (+)

Expression


Co-expression Network