G459224


Basic Information

Item Value
gene id G459224
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000321
NCBI id null
chromosome length 5206101
location 4371471 ~ 4406882 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU527168
CTGAATTGAGCTCTCTTTCGTGTCTCTTTGCACTTGAACGGTCAAAAACTGTCCGCTTTGGCAAGTAAAGTACAGTTGGTTGTCTTAAGTGAACATAAGTTTGGAGAATATCAGATGTATATCAGTGTATTGTTAGAGAAATGCTTACTTAATGCATTACAATTTAACTAAATTAGATTTTAGTCGACTAAATCTACTGTAGATTTAGTCGACTAAAACTAGACTAAAACTAAAACAATTTCCGAGGACTAAAATATGACAAACTAAATGCCATTTTAGTCAAAAGACTATGACTAAAACTAAATTAAAATTAACACTGCTTCAGAAATCATTCTAATATGCTGATTTGCTGCTCAAGAAATATTTATTATTATTAACAATATTGAAAACAGTTTTCTGGATTCTTTAATGAATAGAGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGATTGTAAAAACATTTTGCCTGAAAAGCCACTGTGAAAACATTCACAGCAAGCAAACAGACAGGCTCTTTATTCTATAGTCACAACATGTTTATTCATATTTACACATTTATAGTCAAATCCATACAAACACACAAAAGGAGACATCCGGTTAACTAAATAAATACTGTAAACATGTTGAGGGACACAATCACCAGAACACTGCTGCTCTGTTACTTGGTTTAAATTGAACTGAATACAAACAGTGTCGCAATGCATTTGCGATTATTAGCTAAGGGCTAAAATGCACAAAACGTATTTGCCCGATAAATAATTATATTGTAACAGTGATGCTTGTTTGTCAGTTATTTTCCAAAATGGAGTGTTACATTAATGCTTTTTTCCCACCACTTATGGCTGTCCACAAAAACCATTAGCCACAATTGGCTGGAAGAACTGAACTTGGGAGGGTATATTAACTCAACAACCCTCCAAAAGCCCAATCAAGCATCTTTTAGATGTCCCAAGTTCCTCACATTCTCCTGCTGCGCATGGAGCGGTTCTCACATTATGGGAAGATGATCGAGAAATCATGTGCTGTGCACCTGCTTCATTAGGTTCTCTTGCACTATAAAACTTTAATCAATGTCAGTTCAGCTCCACAACTCTCTTGGCATGCGAGTCCTCGAGTTTTTTTGGCGTAAGACAGACATTTGGTTGAAAATGAATATCATTGTCACCGACTGATGTCACGGTTTCCCTCCCAGCTCTTGCCGGCGTTCTGGTCAGCGCTGCTGATAGTGCTCTGAAAGAAAGGATGCCTCAGGGCCGCAGCGAGAGTGAGACGCTTCGTCGGCTCATACTCCAGCATGGCCTCGATCAGATCGAACAGCTGATGATGCTCTTCAGCTTCAGATAGAAGATATCTCTGTAAGGTTTGCAGTTTTCTCTGACATATCTTCCTGCTGAAGAGTTCTCGTCCCAGTCCAGGC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU527168 True 1418 lncRNA 0.38 3 4371471 4406882

Neighbor

gene id symbol gene type direction distance location
CI01000321_04299710_04300495 NA coding upstream 70950 4298858 ~ 4300521 (+)
CI01000321_04274723_04276159 NA coding upstream 95254 4273845 ~ 4276225 (+)
CI01000321_04223582_04224440 NA coding upstream 145960 4223582 ~ 4225511 (+)
CI01000321_04204706_04214819 IFFO1A coding upstream 156610 4204076 ~ 4214861 (+)
CI01000321_04188431_04194328 ING4 coding upstream 177086 4188431 ~ 4194385 (+)
CI01000321_04515562_04517953 MRPS21 coding downstream 108680 4515534 ~ 4518187 (+)
CI01000321_04524751_04530395 NA coding downstream 117869 4524751 ~ 4531478 (+)
CI01000321_04532761_04559105 NA coding downstream 125879 4532761 ~ 4559105 (+)
CI01000321_04567844_04592431 CELF3, CELF3A coding downstream 160962 4567844 ~ 4592571 (+)
CI01000321_04605557_04620142 NA coding downstream 198083 4604965 ~ 4620398 (+)
G459162 NA non-coding upstream 2645 4368280 ~ 4368826 (+)
G459259 NA non-coding upstream 5713 4365557 ~ 4365758 (+)
G459218 NA non-coding upstream 46052 4325200 ~ 4325419 (+)
G459161 NA non-coding upstream 66503 4303586 ~ 4304968 (+)
G459201 NA non-coding upstream 81468 4281033 ~ 4290003 (+)
G459233 NA non-coding downstream 4124 4411006 ~ 4413340 (+)
G459284 NA non-coding downstream 21848 4428730 ~ 4430217 (+)
G459292 NA non-coding downstream 34295 4441177 ~ 4441453 (+)
G459239 NA non-coding downstream 44744 4451626 ~ 4460682 (+)
G459225 NA non-coding downstream 88576 4495458 ~ 4498112 (+)
CI01000321_04013470_04014515 CACNG8 other upstream 357805 4013468 ~ 4015412 (+)
CI01000321_03795430_03804685 SHISA7B, SHISA7 other upstream 568589 3792915 ~ 3805511 (+)
CI01000321_00815160_00819665 NA other upstream 3548624 815160 ~ 819749 (+)
G456774 NA other upstream 3944446 426083 ~ 427025 (+)
G459303 NA other downstream 78515 4485397 ~ 4488552 (+)
CI01000321_04748037_04748315 DPM3 other downstream 340530 4747650 ~ 4749579 (+)

Expression


Co-expression Network