G459233


Basic Information

Item Value
gene id G459233
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000321
NCBI id null
chromosome length 5206101
location 4411006 ~ 4413340 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU527177
CGATGATCAATACATTGCATCACCCTCCCGAAGGTGCCCTCGCCCAAAGTGCTGACAATCTCATCTAAGAGACAAATAGAGGGAAAAAGACGTAGAGAAAAGGGGAGGGGAGATGTAAAGAGCTTAATTAGACAGCGCATTTAAAGAGAAATCCTAAACAAGTTTCCTAGAATCACATTTTTAATGTTAACTGTGACTATCTATTCAGGTTAACCTAAAAAAAAAAAAAAAAAAAAATAATAATAAGAATAATAATAAGAATAAAAAAAATAAAAATAATACGACAAGCGACACTCTCGATGACAGGAATAAAGTAAACATGTTTGAAAAAAAAAAAAAAAAACGCATGTTTTTTCAACAACAAAAATAGTCTGCATTTGTTTAAAAAAAAAAAAAAAAAAAAAAACACGTTACGAAAAATAGACTTTACGTAGGTCCGACGCAGAAGGACCGCTAATAGATAAAAAGTTTAACAGGGATTTTAAAACAACAGGACTGCTTTACGCTAATTCGAAAACTAAAACGACTATTTACTATGAAAAATGACATGCATAGCACCTATGGAAATATTTGCATGTCACAGAGCAATCAAATCTTTAAATCGAAATGATTGACAGTATACGATGTAGGGGTAATGTGAATAACCTTGGGACATTAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATATGGGACATTATGAAGACTGGAAAAAGCTAAATCTGGGAACCTGGCAGTCAGGAATTAAAAAGGATCATAATATTTCTACACAGCAATACAAACACCCCATCCCCACTGAAAAGAATAAAAAAAAAGGAGCTACTAAAGACATGTTCGACATGCCTTCCCCCTTGCCTGTTTCGGCAAAAGGGGAGAACATTCTATGGCAGCATCATCATCACCACCAACATCATGATCATGACCTCCTGCCCTCCCCTGTGTGTGTCTGCTGTGTGCTGGTACTGATAGGGAGAAAGGTTACGATATAGGAGTAGAGGAGTAGTAGTAGTGGCAGTGTGTACATCTCTCTTGCAGGACGTCGCCACTCCGACAGATCAGGTGACCCTCCTCGTCGTCCCTCACACACAGTGCCCGTGTCCCGCTGTCACTCCGCTGCTTCGGCCCCGGCCAGGGTCACAGGTCAGAGGTCACGCCACGACCGCAGAGGGAGGAGGGGAGGTGGGCGGAGCGGGGAGAGTGGAGGGGGGCAGCCGTAGCCACGGCGACGAAGATGAGCAGTGTTGTAGTTGTTGTAGGTAGATTTGGTGGTCATGGGGCGAATCGTATGACACCACGTGAGGAGATATATATAACGATAGGGATATAGTGCAAGGGATCAAGTCAAAGATAACATTTTACCCCTCCCTTCTTGCTTGCTTTCAAACTCCCCCTCATCCCTCTGCCTAGCAACCCTGACAAAAAGTCACAAAAAGCAACCTGCATCAACATTTACTCATAGAAGAGCACATGAGTGAAGGCATTGCTAATTCACAACATGACAAAAGAAACAGGTTGCTCTACTGAGAGACTGGAAATAAAATTAAAGAGCTGAAATTATGGAGCAACTTTGCATGTTTTCATAAAACAAACTGTGAAAGTTATATAGGCGTGTAGATAGAGCAAGAAAAAGAATGGATGAGAGTTATGAGATATTACAGAGGCTTTCCCAACAAACACATTTACTACTTATATTTACATTAATGTCTACTGTATTGAGTCTCACTATAATGTTACAGTTGGGCCAATTCGATTATTAACACTGAAAGCCAAGACTTAGACTAATCACTATTAAAAAAGACAAAATGTCAACAAAAAGAAGAACATAAAACAAAAGAGTTCATACTTACCAAATCCTGGGGCTGTGGAAAAGAAAAGCATTATGGAGAAAGAGAGACAGGAGCGTGTAGAGGTAGAGAGGGAAGAAGGGATTTGGGGGAGGGAAAGAGCAGGCTCGGGTATTGAAGTACTCACCGAGGAGGATGGGCTATAGGACCTGGTTCTACGCCGCCTTCGTTTGTGCTTACGCCTGCTGCCTTTCCTCCGGTACGAGTCCTCGCGGTCCCGATCACGACCCCGTCGGAAGTCGTAGCTGGGCGAGGCGTCGCGGGAGTAGTAGTTGCTCGGCGTCCTGTGTTCCCTGTCGCGATCCCGGTCCCGGCTGTGGTCCAGACGCCGATGGCTCTCGCCGTAGTGTCTGTCGTATGGCCTGCGATCTGAAGAGCGGTTGTCGTAGCTGGGAAGTGTGATATACCATAGAATCACTTACAGAAATAATGATTCTTCCAAATT

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU527177 True 2301 lncRNA 0.42 2 4411006 4413340

Neighbor

gene id symbol gene type direction distance location
CI01000321_04299710_04300495 NA coding upstream 110485 4298858 ~ 4300521 (+)
CI01000321_04274723_04276159 NA coding upstream 134789 4273845 ~ 4276225 (+)
CI01000321_04223582_04224440 NA coding upstream 185495 4223582 ~ 4225511 (+)
CI01000321_04204706_04214819 IFFO1A coding upstream 196145 4204076 ~ 4214861 (+)
CI01000321_04188431_04194328 ING4 coding upstream 216621 4188431 ~ 4194385 (+)
CI01000321_04515562_04517953 MRPS21 coding downstream 102222 4515534 ~ 4518187 (+)
CI01000321_04524751_04530395 NA coding downstream 111411 4524751 ~ 4531478 (+)
CI01000321_04532761_04559105 NA coding downstream 119421 4532761 ~ 4559105 (+)
CI01000321_04567844_04592431 CELF3, CELF3A coding downstream 154504 4567844 ~ 4592571 (+)
CI01000321_04605557_04620142 NA coding downstream 191625 4604965 ~ 4620398 (+)
G459224 NA non-coding upstream 4124 4371471 ~ 4406882 (+)
G459162 NA non-coding upstream 42180 4368280 ~ 4368826 (+)
G459259 NA non-coding upstream 45248 4365557 ~ 4365758 (+)
G459218 NA non-coding upstream 85587 4325200 ~ 4325419 (+)
G459161 NA non-coding upstream 106038 4303586 ~ 4304968 (+)
G459284 NA non-coding downstream 15390 4428730 ~ 4430217 (+)
G459292 NA non-coding downstream 27837 4441177 ~ 4441453 (+)
G459239 NA non-coding downstream 38286 4451626 ~ 4460682 (+)
G459225 NA non-coding downstream 82118 4495458 ~ 4498112 (+)
CI01000321_04635524_04639904 RPS27.1, RPS27, RPS27.2, RPS27.L, RPS27L non-coding downstream 221502 4635524 ~ 4640144 (+)
CI01000321_04013470_04014515 CACNG8 other upstream 397340 4013468 ~ 4015412 (+)
CI01000321_03795430_03804685 SHISA7B, SHISA7 other upstream 608124 3792915 ~ 3805511 (+)
CI01000321_00815160_00819665 NA other upstream 3588159 815160 ~ 819749 (+)
G456774 NA other upstream 3983981 426083 ~ 427025 (+)
G459303 NA other downstream 72057 4485397 ~ 4488552 (+)
CI01000321_04748037_04748315 DPM3 other downstream 334072 4747650 ~ 4749579 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location