Gene
RNA
| Item | Value |
|---|---|
| gene id | G459225 |
| gene name | NA |
| gene type | non-coding |
| species | grasscarp (Ctenopharyngodon idella) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | CI01000321 |
| NCBI id | null |
| chromosome length | 5206101 |
| location | 4495458 ~ 4498112 (+) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU527169 | True | 1835 | lncRNA | 0.37 | 2 | 4495458 | 4498112 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| CI01000321_04299710_04300495 | NA | coding | upstream | 194937 | 4298858 ~ 4300521 (+) |
| CI01000321_04274723_04276159 | NA | coding | upstream | 219241 | 4273845 ~ 4276225 (+) |
| CI01000321_04223582_04224440 | NA | coding | upstream | 269947 | 4223582 ~ 4225511 (+) |
| CI01000321_04204706_04214819 | IFFO1A | coding | upstream | 280597 | 4204076 ~ 4214861 (+) |
| CI01000321_04188431_04194328 | ING4 | coding | upstream | 301073 | 4188431 ~ 4194385 (+) |
| CI01000321_04515562_04517953 | MRPS21 | coding | downstream | 17450 | 4515534 ~ 4518187 (+) |
| CI01000321_04524751_04530395 | NA | coding | downstream | 26639 | 4524751 ~ 4531478 (+) |
| CI01000321_04532761_04559105 | NA | coding | downstream | 34649 | 4532761 ~ 4559105 (+) |
| CI01000321_04567844_04592431 | CELF3, CELF3A | coding | downstream | 69732 | 4567844 ~ 4592571 (+) |
| CI01000321_04605557_04620142 | NA | coding | downstream | 106853 | 4604965 ~ 4620398 (+) |
| G459239 | NA | non-coding | upstream | 34776 | 4451626 ~ 4460682 (+) |
| G459292 | NA | non-coding | upstream | 54005 | 4441177 ~ 4441453 (+) |
| G459284 | NA | non-coding | upstream | 65241 | 4428730 ~ 4430217 (+) |
| G459233 | NA | non-coding | upstream | 82118 | 4411006 ~ 4413340 (+) |
| G459224 | NA | non-coding | upstream | 88576 | 4371471 ~ 4406882 (+) |
| CI01000321_04635524_04639904 | RPS27.1, RPS27, RPS27.2, RPS27.L, RPS27L | non-coding | downstream | 136730 | 4635524 ~ 4640144 (+) |
| G459323 | NA | non-coding | downstream | 195502 | 4693614 ~ 4767280 (+) |
| G459240 | NA | non-coding | downstream | 198559 | 4696671 ~ 4700949 (+) |
| G459231 | NA | non-coding | downstream | 212320 | 4710432 ~ 4711448 (+) |
| G459682 | NA | non-coding | downstream | 348244 | 4846356 ~ 4846583 (+) |
| G459303 | NA | other | upstream | 6906 | 4485397 ~ 4488552 (+) |
| CI01000321_04013470_04014515 | CACNG8 | other | upstream | 481792 | 4013468 ~ 4015412 (+) |
| CI01000321_03795430_03804685 | SHISA7B, SHISA7 | other | upstream | 692576 | 3792915 ~ 3805511 (+) |
| CI01000321_00815160_00819665 | NA | other | upstream | 3672611 | 815160 ~ 819749 (+) |
| G456774 | NA | other | upstream | 4068433 | 426083 ~ 427025 (+) |
| CI01000321_04748037_04748315 | DPM3 | other | downstream | 249300 | 4747650 ~ 4749579 (+) |
