Gene
RNA
| Item | Value |
|---|---|
| gene id | G459919 |
| gene name | NA |
| gene type | non-coding |
| species | grasscarp (Ctenopharyngodon idella) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | CI01000321 |
| NCBI id | null |
| chromosome length | 5206101 |
| location | 5186344 ~ 5186707 (-) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU527950 | True | 364 | lncRNA | 0.42 | 1 | 5186344 | 5186707 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| CI01000321_05151190_05175511 | NA | coding | downstream | 10833 | 5150311 ~ 5175511 (-) |
| CI01000321_05141500_05146892 | NA | coding | downstream | 37932 | 5141010 ~ 5148412 (-) |
| CI01000321_05078234_05124375 | NA | coding | downstream | 61907 | 5077892 ~ 5124437 (-) |
| CI01000321_04965389_04968595 | NA | coding | downstream | 216999 | 4963879 ~ 4969345 (-) |
| CI01000321_04864287_04872091 | EFNA3A, EFNA3 | coding | downstream | 314253 | 4863945 ~ 4872091 (-) |
| G459807 | NA | non-coding | downstream | 156031 | 5029979 ~ 5030313 (-) |
| G459764 | NA | non-coding | downstream | 250663 | 4934619 ~ 4935681 (-) |
| G459645 | NA | non-coding | downstream | 387570 | 4798495 ~ 4798774 (-) |
| G459610 | NA | non-coding | downstream | 436763 | 4701479 ~ 4749581 (-) |
| G459803 | NA | other | downstream | 160458 | 5018966 ~ 5025886 (-) |
| G459011 | NA | other | downstream | 1369949 | 3810127 ~ 3816395 (-) |
| CI01000321_03737149_03737996 | TMEM238A | other | downstream | 1448359 | 3736456 ~ 3738096 (-) |
| G458957 | NA | other | downstream | 1519345 | 3661626 ~ 3666999 (-) |
| G458859 | NA | other | downstream | 1696810 | 3471881 ~ 3489534 (-) |
