CI01000325_02399892_02431492



Basic Information


Item Value
gene id CI01000325_02399892_02431492
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information


Item Value
chromosome id CI01000325
NCBI id null
chromosome length 10587162
location 2399892 ~ 2431492 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence


>CI01000325_02399892_02431492.mRNA
ATGACCTCCAGCATAGACCGGGATGACAGCAGTATCTTTGATGGGTTGATGGAAGAAGATGAGAAGGACAAAGCAAAAAGAGTATCTAGGAACAAGTCGGAGAAGAAGAGGCGAGACCAGTTCAATGTGCTCATCAAGGAACTGGGCACCATGTTGCCGGGCAACACCCGCAAGATGGACAAGTCAACCATCCTACAGAAGAGCATCGACTTCCTGCGCAAGCACAAAGAAATTGCTGCGCAGTCTGAGTCAAGTGAAATCCGTCAGGACTGGAAGCCGCCATTCCTTAGCAATGAGGAGTTCACACAGCTGATGCTGGAGGCACTTGATGGCTTCTTTCTGGCCATCATGACGGACGGCAACATAATCTATGTCTCAGAAAGTGTTACGTCTTTATTAGAACATCTACCTTCTGATCTTGTGGATCAGAATCTGTTGAATTTCCTTCCACGGGGTGAGCATTCGGAGGTGTATAAAGCCCTGTCCACACACATGCTGGAAGGAGAGACCCTCACCCCAGACTACCTAAAGACAAAGAACCAGTTAGAGTTCTGTTGCCACATGCTCCGGGGCACGATCGACCCGAAAGAGCAGCCCGTTTATGAGTATGTCAAGTTCATCGGAAACTTTAAGTCTCTCAACACTGTGCCTAACTCAACACGTAATGGCTTTGAGGGAGTGATCCAGCGATCGCTGAGGCCGGCGTTTGAAGACAGAGTGTGTTTCATAGCAACCGTGAGGTTAGCCAAACCTCAGTTTATCAAGGAAATGTGTACTGTGGAGGAGCCCAATGAGGAATTCACCTCCAGACACAGTTTAGAGTGGAAATTCCTTTTCTTGGACCACAGGGCGCCTCCCATCATAGGTTACCTACCCTTTGAGGTTCTGGGTACTTCAGGGTACGACTACTATCACGTGGATGACCTGGAGACTCTGGCCAAGTGTCATGAACACTTGATGCAGTATGGTAAGGGGAAGTCGTGCTATTACCGTTTTTTGACTAAAGGTCAGCAATGGATCTGGCTTCAGACTCACTACTATATCACCTACCACCAGTGGAACTCAAGGCCGGAGTTCATTGTCTGCACACACACTGTGGTCAGTTATGCTGAAGTGAGGGCTGAACAGCGCAGGGAGCTGGGCATTGAGGAATCGCCTCCTGAGATCTCAGCAGACAAGTCTCAGGACTCCGGCTCTGAGTCTCAGTTAAACACCTCTAGCCTGAAGGAGGCCCTAGAGCGATTCGATCACAGCCGCACACCCTCCGCCTCATCGCGGAGCTCCCGCAAGTCCTCCTCACACACCGCCGTCTCGGACCCCACGTCCACACAGACAAAGCTGCAGACAGACCATAGCACACCACCCCGCCAATCAGTGTCAGCCATTGAGATGACATCACAGCGGAGGTCCTCCATTAGCAGTCAGTCGATGAGTTCTCAGAACACAGGACAGACAATGGCCACATCTCTTGTGTCTCAGCCTCAGCAGCCTCAACCACTTCAGCCCACTGTGCAGCCAGTGATTCAATTTTCCACACAGATGGATGCGATGCAGCATCTTAAGGAGCAGCTGGAACAGCGAACACGCATGATTGAGGCCAACATCCAGAGACAACAAGAGGAACTGCGGCAAATCCAGGAGGAGCTGCAGAGGGTGCAAGGGCAGGGCTTACAGATGTTCCTGCAGCCAGGAGGCGGTGGTCTGAACCTGGGCTCAGTACAGCTGACCCAGGGATCGTCCGTGCAGCCAGGGAGCGCTCTGTCTATGCAGGGGGCGGTGGTGCCGGCGGGGAGCCTGCAAAGCGGCCTGCAATCCACACATACAGGGACACAACACACTGTTACACAGCATCCTCAGCAGGCACCGCCACAGCAACAGAACCTTCTCAGAGATCAGAGCTCCACCCTAAATCAGCAGTCTCAGAGGTCATCTCACACATTGCAGTCTCCTCAGGGAGCACTTCCTGCATCTTTGTACAATACCATGATGATCTCTCAGCCGGCGCAGGCCAATGTTGTGCAGATCTCCACAAGCCTGGCCCAGAACAGCAGCCCCAGCGGAGCAGCGGTTGCCACCTTCTCACAAGACCGGCAGATACGGTACATGTTCCCTGCTGCCCCACAGCTCCTCACTAAGCTAGTAACCGGCCCAATGGCATGTGGTGCAGTCATGGTGCCTACCACCATGTTCATGGGGCAGGTGGTGACTGCGTTTGCCCCGCAGCAGGGCCAGGCTCAAACAATAAGCATCACTCAGCAGCCGTCTGCACAGACGCCGGAGCAGCAGGCTCAGACGCAGTCACAGACAGCTACAGGAACAGCCCAACAGCAAGGACAGGCCCAGGCTCAGCTCACCCAGCAGCAAACACAATTCCTACAGGCCCCTCGGCTTTTACATGGCAACCAGTCTGCCCAGCTGATCCTTCAGGCAGCGTTTCCTCTGCAGCAGCAAGGCACCTTTGCAACTGCAACACAACAACAGCAGCAACTGCAACAGCAGCAACAACAGCTGCAGCAGCAGCATCAACAACAACAGCAACAGCTGCAACAACAGCATCAACAACAGCAGCAGCAGTTGCAGCAACAACAACAGCAGCAGCTACAGCAGCAACAACAGCAACAGCAGCAGCTACAGCAGCAATTGGCAGCTCATCGCTCAGACAGCATGACGGACCGGTCCAATGCACCACCTCAGTAG

Function


GO:

id name namespace
GO:0005737 cytoplasm cellular_component

KEGG:

id description
K02223 CLOCK, KAT13D; circadian locomoter output cycles kaput protein

RNA


RNA id representative length rna type GC content exon number start site end site
CI01000325_02399892_02431492.mRNA True 2697 mRNA 0.53 20 2399892 2431492

Neighbor


gene id symbol gene type direction distance location
CI01000325_02211008_02215705 L3HYPDH coding upstream 184078 2209618 ~ 2215814 (+)
CI01000325_02067666_02085794 ESR2A, ESR2, ERBETA coding upstream 314098 2067666 ~ 2085794 (+)
CI01000325_01944358_01986788 JAG2, JAG2B coding upstream 413104 1944358 ~ 1986788 (+)
CI01000325_01914049_01923709 NA coding upstream 474777 1913951 ~ 1925115 (+)
CI01000325_01662729_01717180 BRF1B, BRF1 coding upstream 682712 1662729 ~ 1717180 (+)
CI01000325_02484476_02491983 KDR coding downstream 52984 2484476 ~ 2492226 (+)
CI01000325_02618395_02618952 NA coding downstream 185914 2617406 ~ 2619080 (+)
CI01000325_02751187_02751618 NA coding downstream 318842 2750334 ~ 2751683 (+)
CI01000325_02767014_02793768 LNX1 coding downstream 334085 2762022 ~ 2794226 (+)
CI01000325_02834936_02881751 SCFD2 coding downstream 402924 2834416 ~ 2882034 (+)
G463056 NA non-coding upstream 43491 2288334 ~ 2356401 (+)
G463024 NA non-coding upstream 190716 2208844 ~ 2209176 (+)
G463001 NA non-coding upstream 280031 2119339 ~ 2119861 (+)
G462996 NA non-coding upstream 285498 2111486 ~ 2114394 (+)
G462980 NA non-coding upstream 329970 2069506 ~ 2069922 (+)
G463080 NA non-coding downstream 21494 2452986 ~ 2453229 (+)
G463083 NA non-coding downstream 26614 2458106 ~ 2458305 (+)
G463084 NA non-coding downstream 27093 2458585 ~ 2459161 (+)
G463087 NA non-coding downstream 63084 2494576 ~ 2494931 (+)
G463522 NA non-coding downstream 69689 2501181 ~ 2501442 (+)
G462928 NA other upstream 399008 2000477 ~ 2000884 (+)
G462778 NA other upstream 503077 1828082 ~ 1896815 (+)
G462730 NA other upstream 779698 1617596 ~ 1620194 (+)
G463566 NA other downstream 131663 2563155 ~ 2563735 (+)
G463724 NA other downstream 296714 2728206 ~ 2728450 (+)
G464950 NA other downstream 2626964 5058456 ~ 5090938 (+)
CI01000325_05549713_05553140 TMEM251 other downstream 3120628 5549713 ~ 5554577 (+)
CI01000325_05655953_05691697 PRIMA1 other downstream 3223920 5654840 ~ 5692630 (+)

Expression



Co-expression Network


Homologous


species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_017283 clocka coding NC_007131.7 CM002904.2 22067337 ~ 22176003 (+)