CI01000325_02484476_02491983 (KDR)


Basic Information

Item Value
gene id CI01000325_02484476_02491983
gene name KDR
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000325
NCBI id null
chromosome length 10587162
location 2484476 ~ 2492226 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000325_02484476_02491983.mRNA
CTAAAATCTTTGTACAAAAATGTTACCATACATGGAGACGCAAGTGTTCACAAATGTATACCATGTTCTCCAGGAGAGCCTCTGGGCAGAGGAGCATTTGGTCAAGTTGTGGAGGCGACCGCATATGGTATTGAGAAGGCCACCACCTGTACAACAGTAGCAGTGAAGATGCTCAAGGAGGGCGCTACTTCCAGCGAGTACCGTGCTCTGATGTCTGAGCTGAAGATCCTCATCCATATTGGTCACCATCTCAATGTGGTCAACCTTCTAGGCGCCTGCACTAAACCAGGGGGACCCTTGATGGTGATTGTAGAGTACTGTAAACACGGTAACCTCTCCAGCTATTTAAAAAGCAAACGAGGAGAGTACAGTCCCTACAAGAAGCGGATGCCACGGATGCCGTGCAAAAGGGAGGTAAAACAGGAAGAGGATTTACATGAGGGGGATCTGGGTCTGGGAACCAGCACTCGACTGGACATCTGCACTGGCACTGCAGTGTGCACCAGGATGGGAGAACAGACCTCCACAACCCAGCTTCAAGATGAACAAGAGAGTTCAGACTGGGATCACCTCACAATGGAGGATCTCATCAGCTATAGCTTTCAGGTGGCCAAAGGCATGGAGTTCCTAGCCTCTCGAAAGTGTATCCACCGGGACTTGGCAGCCAGAAACATCCTACTTTCTGAGAACAATGTGGTGAAGATATGTGATTTTGGGCTGGCTAGAGACGTTTATAAAGACCCTGATTACGTCCGTAAAGGAGATGCTCGTCTTCCTCTCAAGTGGATGGCTCCTGAGACCATTTTTGACCGCGTGTACACCACGCAGAGTGATGTTTGGTCTTTTGGCGTACTGCTATGGGAAATCTTCTCACTTGGTGCGTCTCCATACCCAGGTGTGTGCATTGATGAGTCTTTCTGTAGGCGACTGAAGGAGGGAACCAGAATGAGAGCTCCAGATTACGCCACACCTGAGATGTACCAGACCATGCTGGACTGCTGGCTTGATCGACCTACAGACAGGCCAACATTTACCCAGTTAGTTGAGCATCTGGGCAATCTGCTACAGGCTAGCGCTCAACAGGATGGAAAGGATTACATCCCACTGACAAACGGAGAGATGGAAGAGGAATCAGGGGCTCCTCACGTCAGTGTGACATCTAAAAGAACACACTGTGCAGGCAACACAGAGGCCCAGCTCCACTATGACAATGCTCCAGCTCTGGGGTTCCCACATCAGTTAGACAGTTGTGGTGTGCCAATAAGTATGATGACTTTTGTGAACATTCCCCTGGAGCACACTGCTGTAATGAATGGTCACATGGACTGTGGAGTGGGCTTATCACGTGAGCAGATGAAAGCTTTGGATAGGCAGGTGCAAAGACCAATCAATTTCAGCCCACTACTGCGATGCAAAAGTAAGGAGTCTTTAGCTTCTGAATCGTCCAATCAGACCAGTGGTTATCAGTCTGGTTACCACTCTGATGATGCCGAAGCCCCGATATATGCCAACGAGGAGATGATCCTGAAGAGAGACATTCGGAAGAAACCTCCACTGCCCAAGAGAAACGACAAGTTCAGTGCAGAGGGGAGTTTGGAGAGTGAGAAAGCCTTAGCAATACAATCATGTTTACACAGACTGCGGAGCAAGAGTGGTCTCTCAGTGTGTCCACGCCACTTCCTGAGCAGAGGCATGCCCTCTTCCTACTGCACAGGAAATAGCAACTGGAATGTCAGACAATTGAGTGTGTGAATGTTTTCCATTTTTTGTCTTCATCTTTTGTATTGTCTTTAAACGAATCGTGACCAGACTTATTCTCCCCAAGCAACAGTCTGTCTGAATTCTTTTTTTTTTTCAGCTTTGTTTCTTGGTTGGCCTTTTGATTGTACAGTTTATAATGAGGGCCTTCTTTGTCTTTGTAAGAAAAATGCCAGTATTTTGCTATTATGATTATTATTTCAGTTACACGTCCATTAATGTAATTAGTTTTTTAAA

Function

symbol description
kdr Predicted to enable transmembrane receptor protein tyrosine kinase activity. Acts upstream of or within angiogenesis. Predicted to be located in endoplasmic reticulum. Predicted to be part of receptor complex. Predicted to be integral component of plasma membrane. Is expressed in several structures, including axis; endocardium; intermediate cell mass of mesoderm; tail bud; and vasculature. Human ortholog(s) of this gene implicated in several diseases, including adhesions of uterus; artery disease (multiple); gastrointestinal system cancer (multiple); macular degeneration (multiple); and pancreatic cancer (multiple). Orthologous to human KDR (kinase insert domain receptor).

GO:

id name namespace
GO:0005783 endoplasmic reticulum cellular_component

KEGG:

id description
K05098 KDR, VEGFR2, CD309; kinase insert domain protein receptor

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000325_02484476_02491983.mRNA True 1995 mRNA 0.47 14 2484476 2492226

Neighbor

gene id symbol gene type direction distance location
CI01000325_02399892_02431492 NA coding upstream 52984 2399892 ~ 2431492 (+)
CI01000325_02211008_02215705 L3HYPDH coding upstream 268662 2209618 ~ 2215814 (+)
CI01000325_02067666_02085794 ESR2A, ESR2, ERBETA coding upstream 398682 2067666 ~ 2085794 (+)
CI01000325_01944358_01986788 JAG2, JAG2B coding upstream 497688 1944358 ~ 1986788 (+)
CI01000325_01914049_01923709 NA coding upstream 559361 1913951 ~ 1925115 (+)
CI01000325_02618395_02618952 NA coding downstream 125180 2617406 ~ 2619080 (+)
CI01000325_02751187_02751618 NA coding downstream 258108 2750334 ~ 2751683 (+)
CI01000325_02767014_02793768 LNX1 coding downstream 273351 2762022 ~ 2794226 (+)
CI01000325_02834936_02881751 SCFD2 coding downstream 342190 2834416 ~ 2882034 (+)
CI01000325_02897237_02903784 NA coding downstream 403746 2895972 ~ 2903929 (+)
G463084 NA non-coding upstream 25315 2458585 ~ 2459161 (+)
G463083 NA non-coding upstream 26171 2458106 ~ 2458305 (+)
G463080 NA non-coding upstream 31247 2452986 ~ 2453229 (+)
G463056 NA non-coding upstream 128075 2288334 ~ 2356401 (+)
G463024 NA non-coding upstream 275300 2208844 ~ 2209176 (+)
G463087 NA non-coding downstream 2350 2494576 ~ 2494931 (+)
G463522 NA non-coding downstream 8955 2501181 ~ 2501442 (+)
G463550 NA non-coding downstream 38008 2530234 ~ 2533054 (+)
G463568 NA non-coding downstream 73282 2565508 ~ 2565770 (+)
G463582 NA non-coding downstream 88679 2580905 ~ 2581146 (+)
G462928 NA other upstream 483592 2000477 ~ 2000884 (+)
G462778 NA other upstream 587661 1828082 ~ 1896815 (+)
G462730 NA other upstream 864282 1617596 ~ 1620194 (+)
G463566 NA other downstream 70929 2563155 ~ 2563735 (+)
G463724 NA other downstream 235980 2728206 ~ 2728450 (+)
G464950 NA other downstream 2566230 5058456 ~ 5090938 (+)
CI01000325_05549713_05553140 TMEM251 other downstream 3059894 5549713 ~ 5554577 (+)
CI01000325_05655953_05691697 PRIMA1 other downstream 3163186 5654840 ~ 5692630 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_017286 kdr coding NC_007131.7 CM002904.2 22220988 ~ 22277544 (+)