CI01000325_02767014_02793768 (LNX1)


Basic Information

Item Value
gene id CI01000325_02767014_02793768
gene name LNX1
gene type misc
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000325
NCBI id null
chromosome length 10587162
location 2762022 ~ 2794226 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000325_02767014_02793768.mRNA
TTATAAAAAAAAAAAGGCAACTGACCGTTACAGTGCTTTACAGTGATCACCAAGCATTTTCATGTGTATTTTGATAACTCCTTTTAACATATAAGACAAATGATAACCCAGCACAGTGGGAAGATAAAAGAATGAGAAGGAAATGCAAAAGACCTGTGGAAGGTTTGACTTGATTGGACTGTCCAAATGTAGACATGTGAATGGCAATTTCCGACGAGTTTTAGATAACAGTTTTTAACGTAGAACACCATCACTGCATACGATTATGCCTACTTCCCTACTAAATAGTAGGCAAAAAGCAGTATGTGACATGTAGTATGTATGAATTCATTGTATTTATAAAACAGTAGGCAAAAAGTACCTGGATGACCTATTAATTCCGGCCAGATTCTGAACTGTGCATCTGATGAACACTTTAATATCCCATGAGGCCATGGGAGACGGCTTGTAAATGGCAGTGAAGGGATGCAACTAATGCTGTAAGTCACATGAAAATGACAACATGGCGAATGTAGTACATCCACATTTATACACTATATATAACATTCTTTTTTTACAGTGGCAAAGTAGGTTTCTCTTCAAATGCCGTACAGTGCCACAATCAATCACAAAACACAGCCAATCAAAACAGGCCTCTCTGTTTACACGCTCAATCACACAAGCAATGCACTGCAACTGTAGAACATCAAACTAAGAGCACATAACTTGTATTTTCATGGCTTCATTGACTTCCATCATGTTTTTTTATGGTTTTCCTTTAAGGGATTTGTCATCAAATATCCGATTATAAACATCCACAATCAGTCACTTGTCATTCATGTTTGATGTTTGACTCAAACCCATGTTTGATGTTTGGCTTAAACCCCGCCCACTGGTCATCTCAGTCAAAAAAGTAAAAAAAAAAAGAAAAAAGTAAGTGATTTGGGGGGGGGGGGGGGGGGGGATCACGCATTTAATATACATGAGAAACGCTACTTTGGTCCAATGAAGTCTTGTGTGGGCGGGGCTACCTGGCATGTTACCACAGAAACTTAATTATCAAAGATAAAAATACTTGTCCCCTCAGCTTGAATGGGCTCTTGCGCACTAGTGTAATAATGCAGGATCTCTTGTCGTCACAGTGGCAAACTCGGAGAGGACCGCATATGTGAAGATATCTGGAAAACTAGGCCAACCAGAGCTGCTCAAGTGAAGCTAAAGTGTGAATAAACAGAAGATTACACACACACACATACACAAACCAACAGTGACCTCCTGCTCTAAAGATATTTTTGTGCTCTTAGAGTAGATACATATTTTAAACCTTCAGTACACAAGCACACATGTCCGCTGGGGCACAAGGCGTCTTAAAAAACACTTAAAATGCACTATTGGGGTGTCAGTTCTATCCTTGGCTGCGACTGAATTTGTGCAGAACAACACGCAAACACATGCAAAATGGATCACGTGCAAAGGGCACGCTCTCCGTCTGCCATAGGAGCAGGTGTAAAGGAGCATCACACTATGGCCTCTCCGCAGAGAGAAAGCGGCGCTCTCAGGAGGGAGACTGCACAGACAGCACCTCAGAGCTCACTGTGGCGGCACTGCCCGGGGAGGGATGCCCCTCCTCTGCTATCGCCCTCCTATCAGACGAGCCTGGCCTGGTTAACCCCGCCTATGAGCCAAGTGTGGAAGATAACAGCCAATCCGGAAGCACCACCAGCCTGGCAGCACGCAGTTCGAGGAAGATCTCCACAATACAGCACCAGCAGGTGCTGCTTACTTCAGATGTTCATTGCTTGGCCTGCAGATCGCAACTTTGACCGAACGTCGGTGCGTAGTCGCTCTTTTCGGCGCCTGAATCGAGCCTTTAGTGTCCTGAGGAGGACCAAGAGTGGGACAGCTGTAGCCAATGAGACCACAGAGGAGCGAGACAACCTCAGAAACGCCAACATACCACCGGAGGCTATCAGCATTGTCGGGGGCAATGAGACGCCTCTGGTACGCATTCTCATTCAGGATATCTACCGAGAGGGGGTCATCGCTCGGGATGGAAGACTGCTACCTGGGGATATGATCCTCAAGGTCAATGGTATAGACATCAGTAACGTGCCTCACTGTTATGCTGTGGCGGCTCTGAAGCAGCCCTGCACACTGCTGCGGTTGACCGTACTGCGCGAGCAGCGCCACCGTTACCGTTCCCACCACCACTCCCCCACCGAGGCCTTCCCCACACACACCCCCACCATCCGGGATGACAGCCTGCATGTGGTCCTCGTTAAGAGGGCTCCAGATGAACAGCTGGGCATTAAGCTGGTGCGCAGGCCTGACGAACATGGCGTCTTCATCTTCCACCTGCTGGAGGGGGGGCTGGCTGCCCGTGACGGGAGGCTGAGGGTAGACGACCGTGTGCTGGCCATCAACGGCCACGACCTGCGATACGGCGCCCCCGAGCATGCCGCGCTGCTTATTCAGGCGAGTGAGGACCGCGTCCACTTCATTGTGTCCCGTCAGACTCACATTCCTACTCCGGACATCCTACAGGAGGCGCCATGGAACATGGAAGGGCCACCGCCCTACTCGCCTGTGGATATTGAGCAGTCATTACTGGATTCGTGCCAAAAGCCTGCATGTTACGAGAAGACAGTGACTCTGTTAAAGGAGCCGCATGATTCTCTTGGTATGACGGTTGCTGGTGGGATGAGCAGCAGGGGGTGGGATCTGCCCGTCTACGTCACCAACGTCGACCCCAATGGAGTGGTGGGACAGGAGGGCTCGATCTGCAAAGGTGACATTCTTCTAAACGTGAATGGGGTTGACCTGACGGGTGTGACTCGGAGCGAGGCTGTGGCTAACCTGAAGAACACATCGTCCCCGGTGGTCCTGCGGGTACTAGAAATGAGACCTCCTAATGAGAGCTCCCTGGACTGCATGCCACCCCTGCATTCCCCCTGCGCTCTCTCGCCCTCTTCACCCGGAGACATCAAAATACCCCCATCTAATGATGACTACGCCCCCCTCTGGGTGTCCTGGCTCCAGCTGCCCAGGCATCTATACTGCTGTAAAGACATTGTCCTCCGCAGGAGCACGTCTGGCAGTCTGGGTTTCAGTATTGTGGGTGGACAAGAAGAACTTAACTGTAACCAGTCCTTCTTCATACGCTCCATTGTAGAGGGCACACCGGCCTACAACGACGGCAGGATACGCTGTGGTGACATCCTGCTGGAGGTGAACAGCAAGAGTACCTGGGGAATGACACACACGGCTCTAGTCCGCCTACTCAAGGAGCTGAGGGGTCGGATCACTCTCACCATTGTTTCTTGGCCTGGCAGCCTGCTATAGGACTACTCTGCATGGAGGAGGGGCGTATCACACTGACCCTGCACTAGGGGGTGGAGCTTACACTACAGACCTTATAATGACAACAAAAATGGTGGATTTTAGAATCCGAGACTTCCTTAAATGGTGGGGCTTATGACACGGACTGCCCCTCCATGAGCAGGAAATGACACATGGACCTCATCCAGGTAGTAGGAGCTAAAACTCTATACATGAAGGCGGAGCCAACAACTTAACTCCGCCCACCAAGAAGCACGTTTGTCAGACTCCAAAACCAGGAGGCGCTTTCACAATTGCCCTTTTGTCGATCGGCAAGGCATAAATATGACATTTGTGCATGAGAGGAGCATCATGTCGGTTATAGATAGAAGGCGGAGCTCTTAATCTGTACTAAAGGACTTGGGAGGGTCTTAAAACAAATTCAGGATGCAATGAGGAGCGCGTCTGTCAATAAGTCGGAA

Function

symbol description
lnx1 Predicted to enable ubiquitin-protein transferase activity. Predicted to be involved in ubiquitin-dependent protein catabolic process. Predicted to be active in cytoplasm. Is expressed in central nervous system. Orthologous to human LNX1 (ligand of numb-protein X 1).

GO:

id name namespace
GO:0046872 metal ion binding molecular_function

KEGG:

id description
K10692 LNX1_2; ligand of Numb protein X 1/2

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000325_02767014_02793768.mRNA False 3779 mRNA 0.49 11 2765577 2794226

Neighbor

gene id symbol gene type direction distance location
CI01000325_02751187_02751618 NA coding upstream 13894 2750334 ~ 2751683 (+)
CI01000325_02618395_02618952 NA coding upstream 146497 2617406 ~ 2619080 (+)
CI01000325_02484476_02491983 KDR coding upstream 273351 2484476 ~ 2492226 (+)
CI01000325_02399892_02431492 NA coding upstream 334085 2399892 ~ 2431492 (+)
CI01000325_02211008_02215705 L3HYPDH coding upstream 549763 2209618 ~ 2215814 (+)
CI01000325_02834936_02881751 SCFD2 coding downstream 40190 2834416 ~ 2882034 (+)
CI01000325_02897237_02903784 NA coding downstream 101746 2895972 ~ 2903929 (+)
CI01000325_02968026_02987575 NA coding downstream 173800 2968026 ~ 2988001 (+)
CI01000325_03041882_03051690 USP46 coding downstream 247656 3041882 ~ 3051927 (+)
CI01000325_03097491_03100127 SGCB coding downstream 303265 3097491 ~ 3100321 (+)
G463731 NA non-coding upstream 22675 2742648 ~ 2742902 (+)
G463727 NA non-coding upstream 33856 2731499 ~ 2731721 (+)
G463725 NA non-coding upstream 36598 2728779 ~ 2728979 (+)
G463716 NA non-coding upstream 55921 2709277 ~ 2709656 (+)
G463709 NA non-coding upstream 89297 2675796 ~ 2676280 (+)
G463771 NA non-coding downstream 238184 3032410 ~ 3033231 (+)
G463773 NA non-coding downstream 265559 3059785 ~ 3060011 (+)
G463776 NA non-coding downstream 292436 3086662 ~ 3086962 (+)
G463777 NA non-coding downstream 298400 3092626 ~ 3092833 (+)
G463778 NA non-coding downstream 300727 3094953 ~ 3095183 (+)
G463724 NA other upstream 37127 2728206 ~ 2728450 (+)
G463566 NA other upstream 201842 2563155 ~ 2563735 (+)
G462928 NA other upstream 764693 2000477 ~ 2000884 (+)
G462778 NA other upstream 868762 1828082 ~ 1896815 (+)
G462730 NA other upstream 1145383 1617596 ~ 1620194 (+)
G464950 NA other downstream 2264230 5058456 ~ 5090938 (+)
CI01000325_05549713_05553140 TMEM251 other downstream 2757894 5549713 ~ 5554577 (+)
CI01000325_05655953_05691697 PRIMA1 other downstream 2861186 5654840 ~ 5692630 (+)
G466144 NA other downstream 3704540 6498766 ~ 6501978 (+)
G466137 NA other downstream 3822974 6617200 ~ 6619471 (+)
CI01000325_03102298_03105905 NA coding downstream 90120 3102298 ~ 3105905 (+)
CI01000325_03106141_03113715 NA coding downstream 93963 3106141 ~ 3114110 (+)
CI01000325_03137938_03140636 NA coding downstream 125760 3137938 ~ 3140641 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
bowfin (Amia calva) AMCG00017513 NA coding CM030131.1 CM030131.1 8023656 ~ 8042454 (-)