CI01000325_05655953_05691697 (PRIMA1)


Basic Information

Item Value
gene id CI01000325_05655953_05691697
gene name PRIMA1
gene type misc
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000325
NCBI id null
chromosome length 10587162
location 5654840 ~ 5692630 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000325_05655953_05691697.mRNA
GTATAAATGAACAGAATGCAATATAAATGTTCAAACAGTATGTTGCATTGCCTCCATGACCTAATACTTCAAAGACTAAATCTTATGTAATATCACAAAGCACACATGTAAGCTTTGCACTGGAATAAACTGTAGTTTTAGCACCAATGCATTATGTAATTAGCTTTTGTCATACAGTAATTAGACAGCAACAATGTTTTTGTTCCATTAACCAAAAATCATCATTCAGACACAAACTACTGAACTAGAAGTGTTTATATACGACACCTGCACTTCCTGTTCGAGACTTTGCTCCAGTACTTTACCACTTTTACTTCCATTTACAATTTCTTTTTTATTTTTCCTTTATTGAAGTCTTTTAATTAAAACTATTTCTTTTCTGCTGTTAATCAAATCCCATTTTGATGGTAATACATAGGCTACACAAAATAACGTCCTTTAATTTACCACGCAAGCTAAAATTAAAATTCTGCCACCTAAACAAAAGCTGTGGATGGCAAACTGCCCCCCTCCCCCTCGGCTCTCTCCCTTACTGCCTCATGTGCTCTGTGTCTGTCTACTCTGCAGAGTACGTTCAACTCGCCCCGAATACATGCTCACTGTCTAACGCCGTGACCTAACCAAACGTAACCCTAATGTTCCTCGTTTAATGCATCTCTTTAGCTAAATCCGGAAGCGATAGGAAACGTGTGATTTCGTCGCTAATGTAAATGGCTATTACATTAATAACAGTGCGTTATCTTGGCGCGCGTCTCTCACTGGACGCCTTCACGTCAGCTGGTGCTGTAGAAGTAATGAAGAGGTGAATCCACAGTCTACAGTTTTGGGACCTACTTGAGCACCGGCGTCCGAGCAATTCGCCGAGACAGCGTGTGTTCTCCGTGCTGTTTTGAGTGTCAGTAACTTCTGTGCCGTGTACTGCCATCATCTCATCATGCATGGCAAGAAATGAATCCTGATTCAGCGCTCGACTCACACAGAATCGCGCGCGGAGAGAACTTTGCTTCGCAACTCTTGTGTGGATACGGCACGCGCCACGGCAGCGCGCGGAGGATCAACAACTTTCCTCAGAAACAGCGCTAGCGTCCTTCCTATGTCGCTTCAAACCCGTCCATGTCACCAATTATTGTCGCTCTAATTGGACGAGAATGTTTCAGAGACCATATCTGCTCAAACTCGGGGGAAACATCGTTGGTAAGCCTTGAGAAGCGGATAATAAATGACTTTTATGCACCTCAGACTCGCGTCCTCACCAGGTGGACTGTGAAGAGACAGAAGAGGAATGTTTATCCGAAATTTATTGCCGCTCAGTTTGGGGTTTTTGCCGTTTTTGTTCATTCACTGTTTTCTCTCAGTATTTCTTCCGTTATTGCAGTTCTAGCCCTGATTAAAGTCATTGATATTGAACTGTTTTATGGAGACATGGCTTTTGGTCCTTTACTACTGTCCCCTGTGGCAACAGTGCTCACAAGACTAGCAAAAGTGTTTCCAGGATGGCCTATTAGGGGGAGGCAGTGTCAGGGTTCACCCCTCAATACTCCCACTCTTCTGGGGTTTGCAAAAGGGGAGCTCCAGAAGTCATGCTCCCGAACCACAGTGGCACCGCTGGAAGGGAGCTGCCAGTTGCCATGCCAGTGTAGGCCCTACCCACCGTTACCGCCTCCACCCCCTCCTCCACCACCCCCAAGGCTCCTGGCTCCAACTGTGGCTCCCTCCACTGTAACCCCCATAATACCCTGGAGGAGAGAGATGGAGATCTTAGTACTGGGGACAGTAAGCTGTGCATCTGTGGTCTTCCTGCTCCTGACTATCATCATTTGCTACAAGGCCATTAAGAGGATTTATTTATCGACCTCAGAGGAGAGGTCACGTAAGACCCAGGCAACCAAACAGTGTGCTGAAATGTCTGGGGAATGGCCACGAGGACCTCTCAGAGAAAGTTCACCCTGTGAAACAGTTCACTATGTACAATATGGCTCAAATATGGCCTTGTGTCATATCGATAGAACACAAACATTTTACCACATTCAAGGGATGGATGTTAAAGCTGTAGCTCAGTTCCACTCTCAAATGACATTTAAAATGGTTCAGCTGAAAAACGGTCTTTATCTTATTCTGTCTGCAAAAGCAGCCTTCATTCAACAAGTTGTTATCTCATATGTTTATTTCTCTGGAAGAAACGGCCCAGATTTTGTTAGTGTCTCAAGGAGGGTCCGAAAGTGCGACATGCTGAAAAATAGAACAAATACGGAAACCCCTTCGAAAAGAAGAAAACGGCACAAGCCGAGGCGAGTATGCCATGAGCTCACGCTGTAAACAGCAGGTAGTGGAAACCAACAACACTGGAGTATAGTCGCCATGATACAGCAAGGCATGTACAGGTGAACATTCTGTACCCTACAGCACCACCGTCTCTCTGTTTGGGTTTATGAGATGGACGCAAGGTATATTACGAATTTAAGAACTGTAAACCGCATGACTGCCCTTCTTGGGACATAGAACGATGTTTAAAGAAAAGACTAACGCGAACAGGAAATTACTGACGTGTATAGGCAAGCATAAGTGGGTTTTGAGGAGACTTGGAAACTCCTAGCCATGCTGGCAGCTGCACGAGTATCACGAGACTTAACCTGGTGGCCCCCCTGGGCCCCCCTTTGATGACAATATACAGCACCAACAACAAA

Function

symbol description
prima1 Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human PRIMA1 (proline rich membrane anchor 1).

NR:

description
Proline-rich membrane anchor 1, partial

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000325_05655953_05691697.mRNA False 2684 mRNA 0.45 8 5654840 5692065

Neighbor

gene id symbol gene type direction distance location
CI01000325_05626291_05627850 NA coding upstream 26877 5626212 ~ 5628157 (+)
CI01000325_05605406_05607986 NA coding upstream 46411 5605250 ~ 5608429 (+)
CI01000325_05556137_05564928 UBR7 coding upstream 89801 5556137 ~ 5565039 (+)
CI01000325_05549713_05553140 TMEM251 coding upstream 101575 5549713 ~ 5554577 (+)
CI01000325_05526039_05530187 NA coding upstream 124653 5526039 ~ 5530187 (+)
CI01000325_05740859_05742551 NA coding downstream 48527 5740592 ~ 5743948 (+)
CI01000325_05765629_05781041 PPP4R4 coding downstream 73564 5765629 ~ 5781456 (+)
CI01000325_05793873_05794963 TMEM179 coding downstream 101808 5793873 ~ 5795113 (+)
CI01000325_05806682_05840917 NA coding downstream 114617 5806682 ~ 5840917 (+)
CI01000325_05852745_05882303 KIF26AA coding downstream 160457 5852522 ~ 5882681 (+)
G465726 NA non-coding upstream 506 5654059 ~ 5654334 (+)
G465723 NA non-coding upstream 15189 5639218 ~ 5639651 (+)
G465251 NA non-coding upstream 88247 5566351 ~ 5566593 (+)
G465175 NA non-coding upstream 202094 5445560 ~ 5452746 (+)
G465922 NA non-coding downstream 200166 5892231 ~ 5892582 (+)
G465958 NA non-coding downstream 218338 5910403 ~ 5910690 (+)
G465979 NA non-coding downstream 451942 6144007 ~ 6144156 (+)
G466010 NA non-coding downstream 496515 6188580 ~ 6188819 (+)
G466011 NA non-coding downstream 497158 6189223 ~ 6189915 (+)
G464950 NA other upstream 563902 5058456 ~ 5090938 (+)
G463724 NA other upstream 2926390 2728206 ~ 2728450 (+)
G463566 NA other upstream 3091105 2563155 ~ 2563735 (+)
G462928 NA other upstream 3653956 2000477 ~ 2000884 (+)
G466144 NA other downstream 806701 6498766 ~ 6501978 (+)
G466137 NA other downstream 925135 6617200 ~ 6619471 (+)
G466236 NA other downstream 1311552 7003617 ~ 7004655 (+)
G466227 NA other downstream 1620018 7312083 ~ 7314812 (+)
G466219 NA other downstream 1789971 7482036 ~ 7486407 (+)

Expression


Co-expression Network