G462782


Basic Information

Item Value
gene id G462782
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000325
NCBI id null
chromosome length 10587162
location 1899368 ~ 1900513 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU531266
TCATTAAAAACACAGACAGCAAGAATACCTAATATTGCTGTCACTTTAAGACAAAATACACGGATCTTAAATACTGATACACATGGGTTGTCTTTTTTGACTGTTTACGTTCACTTAAGACATAAACTATGATTGCTAGTAGGATACTCGCCAAGATGGGCATGTTGGCATAATTTTTATGTGAATTTGTCCATTCAAGCGCAAGACTTCAAAAAACAAAACTTTTTTGTGTCTTCTTGCGCTTGAATATTTATGGCAAGGCTTAAATGAGTTTAGTTTAAACACAGTTAGCAACGTGTGCTGTTCAGGTCTCACTTGCGCTCGTGCACTATCAACACCTGGGTCATGATGGCATAAATGACATATTAGAGCGTACAGCATTCCTATTGAACAAAGTTTACAAAGAGTGACTGTTTTGTCCTCGTTTTTTTATCTTCGCTGTTGTAACGTATTGGGGAGCGAGAATGTGTATCCATCAACAGAAACATACATTAGCTGATCTCCGTCTGTCTGTTTTTATGATTTATTTTCAACAAAACATATTATAGATGTGTCGTCAGATGTAAAATGAACCGTGGTGCAAGTGCGTTTTTTACACCCCTATTAGCGACAATGACCAAAGTAATATCAAAGATGGCGACGCTAATAAAACTGAAAAGTCTTATCACTTTTTATACTGTATGACAAGAGTCCAAGTGAGCTGCAAGTTCATCCAACAGCAGCTTTTATATCTGGGTGGAAAGTGGAGCATTTGAGTTGCGGGAGCAGATGGGAGCAGCTCCGGTGGAGAACTGTGACTATATCTAAAACCTTCAGATGTCAAGTTACTGAAAGGGAAACCACACACAAAAACCTGCAACACACTATAGACACGTTTTTATGCAGAGCAAAGCGGCTCTCTCGCACTGTATGACGTGACAGACAACTAGTTGTCCAGTCCAGTTCCGTTCAAACAGCGCAGGTTTTCCGAGAATGCGATTGTGATTCCTGAAAATTTACTGGTATGAGTTCGGTTATAGCCAACCGCATTGGTTGTCACCCCTGTAAATAACTGAACTGTTATTTACCCCAAAATGAAAATACTGTCATTTATTACTCACCCTCATGTCATTCCACACCCG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU531266 True 1121 lncRNA 0.40 2 1899368 1900513

Neighbor

gene id symbol gene type direction distance location
CI01000325_01662729_01717180 BRF1B, BRF1 coding upstream 182188 1662729 ~ 1717180 (+)
CI01000325_01578092_01612984 PPP1R13BB, PPP1R13B coding upstream 286384 1578092 ~ 1612984 (+)
CI01000325_01545056_01547234 RD3L coding upstream 351551 1545056 ~ 1547817 (+)
CI01000325_01511071_01519388 NA coding upstream 379774 1510804 ~ 1519594 (+)
CI01000325_01458776_01502995 RTN1B coding upstream 396373 1458548 ~ 1502995 (+)
CI01000325_01914049_01923709 NA coding downstream 13438 1913951 ~ 1925115 (+)
CI01000325_01944358_01986788 JAG2, JAG2B coding downstream 43845 1944358 ~ 1986788 (+)
CI01000325_02067666_02085794 ESR2A, ESR2, ERBETA coding downstream 167153 2067666 ~ 2085794 (+)
CI01000325_02211008_02215705 L3HYPDH coding downstream 309105 2209618 ~ 2215814 (+)
CI01000325_02399892_02431492 NA coding downstream 499379 2399892 ~ 2431492 (+)
G462797 NA non-coding upstream 4979 1804653 ~ 1894389 (+)
G462860 NA non-coding upstream 108854 1790183 ~ 1790514 (+)
G462857 NA non-coding upstream 113954 1785167 ~ 1785414 (+)
G462854 NA non-coding upstream 117766 1781356 ~ 1781602 (+)
G462787 NA non-coding upstream 149011 1750113 ~ 1750357 (+)
G462738 NA non-coding downstream 16570 1917083 ~ 1962495 (+)
G462919 NA non-coding downstream 36187 1936700 ~ 1937140 (+)
G462938 NA non-coding downstream 110041 2010554 ~ 2011073 (+)
G462949 NA non-coding downstream 126722 2027235 ~ 2027462 (+)
G462951 NA non-coding downstream 128559 2029072 ~ 2029311 (+)
G462778 NA other upstream 2553 1828082 ~ 1896815 (+)
G462730 NA other upstream 279174 1617596 ~ 1620194 (+)
G462928 NA other downstream 99964 2000477 ~ 2000884 (+)
G463566 NA other downstream 662642 2563155 ~ 2563735 (+)
G463724 NA other downstream 827693 2728206 ~ 2728450 (+)
G464950 NA other downstream 3157943 5058456 ~ 5090938 (+)
CI01000325_05549713_05553140 TMEM251 other downstream 3651607 5549713 ~ 5554577 (+)

Expression


Co-expression Network