G462919


Basic Information

Item Value
gene id G462919
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000325
NCBI id null
chromosome length 10587162
location 1936700 ~ 1937140 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU531408
GACATGGCACCCCAAACCATCCCTGACTGTGGAAACTTTACACTGGACCTCAAGCAACGTGGATTGTGTGCCTCTCCTCTCTTCCTCCAGACTCTGGGACCCTGATTTCCTTTTGTCTTTAGCCCAGGCGAGACGCTTCTGACGCTGTCTGTTGTTCAAGAGTGGCTTGACACAAGGAATGTGACAGCTGAAACCCATGTCTTGCATACGTCTGTGCGTAGTGGTTCTTGAAGCACTGACTCCAGCTGCAGTCCACTCTTTGTGAATCTCCCCCACATTTTTGAATGGGTTTTGTTTCACAATCCTCTCCAGGGTGCGGTTATCCCTATTGCTTGTACACTTTCTTCTACCACATCTTTTCCTTCCCTTCGCC

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU531408 True 373 lncRNA 0.50 2 1936700 1937140

Neighbor

gene id symbol gene type direction distance location
CI01000325_01914049_01923709 NA coding upstream 11585 1913951 ~ 1925115 (+)
CI01000325_01662729_01717180 BRF1B, BRF1 coding upstream 219520 1662729 ~ 1717180 (+)
CI01000325_01578092_01612984 PPP1R13BB, PPP1R13B coding upstream 323716 1578092 ~ 1612984 (+)
CI01000325_01545056_01547234 RD3L coding upstream 388883 1545056 ~ 1547817 (+)
CI01000325_01511071_01519388 NA coding upstream 417106 1510804 ~ 1519594 (+)
CI01000325_01944358_01986788 JAG2, JAG2B coding downstream 7218 1944358 ~ 1986788 (+)
CI01000325_02067666_02085794 ESR2A, ESR2, ERBETA coding downstream 130526 2067666 ~ 2085794 (+)
CI01000325_02211008_02215705 L3HYPDH coding downstream 272478 2209618 ~ 2215814 (+)
CI01000325_02399892_02431492 NA coding downstream 462752 2399892 ~ 2431492 (+)
CI01000325_02484476_02491983 KDR coding downstream 547336 2484476 ~ 2492226 (+)
G462782 NA non-coding upstream 36187 1899368 ~ 1900513 (+)
G462797 NA non-coding upstream 42311 1804653 ~ 1894389 (+)
G462860 NA non-coding upstream 146186 1790183 ~ 1790514 (+)
G462857 NA non-coding upstream 151286 1785167 ~ 1785414 (+)
G462854 NA non-coding upstream 155098 1781356 ~ 1781602 (+)
G462938 NA non-coding downstream 73414 2010554 ~ 2011073 (+)
G462949 NA non-coding downstream 90095 2027235 ~ 2027462 (+)
G462951 NA non-coding downstream 91932 2029072 ~ 2029311 (+)
G462966 NA non-coding downstream 110438 2047578 ~ 2047859 (+)
G462969 NA non-coding downstream 113022 2050162 ~ 2050400 (+)
G462778 NA other upstream 39885 1828082 ~ 1896815 (+)
G462730 NA other upstream 316506 1617596 ~ 1620194 (+)
G462928 NA other downstream 63337 2000477 ~ 2000884 (+)
G463566 NA other downstream 626015 2563155 ~ 2563735 (+)
G463724 NA other downstream 791066 2728206 ~ 2728450 (+)
G464950 NA other downstream 3121316 5058456 ~ 5090938 (+)
CI01000325_05549713_05553140 TMEM251 other downstream 3614980 5549713 ~ 5554577 (+)

Expression


Co-expression Network