G463566


Basic Information

Item Value
gene id G463566
gene name NA
gene type unknown
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000325
NCBI id null
chromosome length 10587162
location 2563155 ~ 2563735 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU532139
CGAGTATTGAAAGTCCTGAATCTAAACCAGTCACCATACCATCATGTTACCAAGAACTACAAGAAGTCTTTAGCAAGACCAAAGCTACCCTGCTTCCACCTCATCGTTCCTGGGATTGTGCCATTGACCTCCTGCCCAGTGCAATGCCTCCCAAAAGTAAGATTTACCCCCTTTCACGTCCTGAAACTCAAGCAATGGAAGACTACATAGAAGAAGCCCTCAGTTCCGGTTTCATTCGTCCATCCACTTCCCCAGCGGCTGCAGGCTTCTTCTTCGTGGAAAAGAAAGATGGAGGACTTCGGCCTTGGATCGACTACAGAGATTTGAATAATGTCACAGTTAAATTCCGTTATCCACTACCACTAGTACCTGCAGCACTTGAACAGCTCAGAGAGGCAAAAATTTACACCAAATTAGATCTCAGGAGCACATACAACCTCATCAGAATCAGAGAAGGTGACGAGTGGAAGACAGCATTTCTGACCACTAGGGGGCACTATGAATACCAGGTTATGCCGTATGGGCTAGCCAATGCACCAGCAGTCTTTCAGTCAATCATCAACGAGATCTTTAGGGACATC

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU532139 True 581 TUCP 0.46 1 2563155 2563735

Neighbor

gene id symbol gene type direction distance location
CI01000325_02484476_02491983 KDR coding upstream 70929 2484476 ~ 2492226 (+)
CI01000325_02399892_02431492 NA coding upstream 131663 2399892 ~ 2431492 (+)
CI01000325_02211008_02215705 L3HYPDH coding upstream 347341 2209618 ~ 2215814 (+)
CI01000325_02067666_02085794 ESR2A, ESR2, ERBETA coding upstream 477361 2067666 ~ 2085794 (+)
CI01000325_01944358_01986788 JAG2, JAG2B coding upstream 576367 1944358 ~ 1986788 (+)
CI01000325_02618395_02618952 NA coding downstream 53671 2617406 ~ 2619080 (+)
CI01000325_02751187_02751618 NA coding downstream 186599 2750334 ~ 2751683 (+)
CI01000325_02767014_02793768 LNX1 coding downstream 201842 2762022 ~ 2794226 (+)
CI01000325_02834936_02881751 SCFD2 coding downstream 270681 2834416 ~ 2882034 (+)
CI01000325_02897237_02903784 NA coding downstream 332237 2895972 ~ 2903929 (+)
G463550 NA non-coding upstream 30101 2530234 ~ 2533054 (+)
G463522 NA non-coding upstream 61713 2501181 ~ 2501442 (+)
G463087 NA non-coding upstream 68224 2494576 ~ 2494931 (+)
G463084 NA non-coding upstream 103994 2458585 ~ 2459161 (+)
G463083 NA non-coding upstream 104850 2458106 ~ 2458305 (+)
G463568 NA non-coding downstream 1773 2565508 ~ 2565770 (+)
G463582 NA non-coding downstream 17170 2580905 ~ 2581146 (+)
G463569 NA non-coding downstream 27967 2591702 ~ 2630604 (+)
G463595 NA non-coding downstream 69905 2633640 ~ 2633870 (+)
G463709 NA non-coding downstream 112061 2675796 ~ 2676280 (+)
G462928 NA other upstream 562271 2000477 ~ 2000884 (+)
G462778 NA other upstream 666340 1828082 ~ 1896815 (+)
G462730 NA other upstream 942961 1617596 ~ 1620194 (+)
G463724 NA other downstream 164471 2728206 ~ 2728450 (+)
G464950 NA other downstream 2494721 5058456 ~ 5090938 (+)
CI01000325_05549713_05553140 TMEM251 other downstream 2988385 5549713 ~ 5554577 (+)
CI01000325_05655953_05691697 PRIMA1 other downstream 3091677 5654840 ~ 5692630 (+)
G466144 NA other downstream 3935031 6498766 ~ 6501978 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_005239 FO704673.1 coding NC_007123.7 CM002896.2 14545475 ~ 14551077 (-)