Gene
RNA
| Item | Value |
|---|---|
| gene id | G466113 |
| gene name | NA |
| gene type | non-coding |
| species | grasscarp (Ctenopharyngodon idella) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | CI01000325 |
| NCBI id | null |
| chromosome length | 10587162 |
| location | 6451849 ~ 6453253 (+) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU535050 | True | 1226 | lncRNA | 0.41 | 2 | 6451849 | 6453253 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| CI01000325_06372477_06396130 | DPF3 | coding | upstream | 55719 | 6372477 ~ 6396130 (+) |
| CI01000325_06347413_06355066 | ZFYVE1 | coding | upstream | 96527 | 6347413 ~ 6355322 (+) |
| CI01000325_06325122_06326464 | RHOV | coding | upstream | 124307 | 6325122 ~ 6327542 (+) |
| CI01000325_06275779_06276922 | CHAC1 | coding | upstream | 174481 | 6272612 ~ 6277368 (+) |
| CI01000325_06262523_06270980 | DLL4 | coding | upstream | 180333 | 6262108 ~ 6272168 (+) |
| CI01000325_06583304_06591407 | FNTB | coding | downstream | 130051 | 6583304 ~ 6591733 (+) |
| CI01000325_06603583_06613761 | NA | coding | downstream | 150330 | 6603583 ~ 6613941 (+) |
| CI01000325_06655754_06657537 | NA | coding | downstream | 201457 | 6654710 ~ 6657621 (+) |
| CI01000325_06662207_06663957 | NA | coding | downstream | 208829 | 6662082 ~ 6664613 (+) |
| CI01000325_06668049_06675473 | GPR176 | coding | downstream | 214796 | 6668049 ~ 6675783 (+) |
| G465946 | NA | non-coding | upstream | 112596 | 6338964 ~ 6339253 (+) |
| G466073 | NA | non-coding | upstream | 202627 | 6248631 ~ 6249222 (+) |
| G466036 | NA | non-coding | upstream | 238165 | 6213476 ~ 6213684 (+) |
| G466116 | NA | non-coding | downstream | 2590 | 6455843 ~ 6458071 (+) |
| G466119 | NA | non-coding | downstream | 12944 | 6466197 ~ 6466816 (+) |
| G466126 | NA | non-coding | downstream | 25375 | 6478628 ~ 6478862 (+) |
| G466114 | NA | non-coding | downstream | 28880 | 6482133 ~ 6485110 (+) |
| G466103 | NA | non-coding | downstream | 34824 | 6488077 ~ 6488873 (+) |
| CI01000325_05655953_05691697 | PRIMA1 | other | upstream | 757866 | 5654840 ~ 5692630 (+) |
| CI01000325_05549713_05553140 | TMEM251 | other | upstream | 897272 | 5549713 ~ 5554577 (+) |
| G464950 | NA | other | upstream | 1360911 | 5058456 ~ 5090938 (+) |
| G463724 | NA | other | upstream | 3723399 | 2728206 ~ 2728450 (+) |
| G463566 | NA | other | upstream | 3888114 | 2563155 ~ 2563735 (+) |
| G466144 | NA | other | downstream | 45513 | 6498766 ~ 6501978 (+) |
| G466137 | NA | other | downstream | 163947 | 6617200 ~ 6619471 (+) |
| G466236 | NA | other | downstream | 550364 | 7003617 ~ 7004655 (+) |
| G466227 | NA | other | downstream | 858830 | 7312083 ~ 7314812 (+) |
| G466219 | NA | other | downstream | 1028783 | 7482036 ~ 7486407 (+) |
