Gene
RNA
| Item | Value |
|---|---|
| gene id | G466144 |
| gene name | NA |
| gene type | unknown |
| species | grasscarp (Ctenopharyngodon idella) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | CI01000325 |
| NCBI id | null |
| chromosome length | 10587162 |
| location | 6498766 ~ 6501978 (+) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU535096 | True | 1111 | TUCP | 0.55 | 3 | 6498766 | 6501978 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| CI01000325_06372477_06396130 | DPF3 | coding | upstream | 102636 | 6372477 ~ 6396130 (+) |
| CI01000325_06347413_06355066 | ZFYVE1 | coding | upstream | 143444 | 6347413 ~ 6355322 (+) |
| CI01000325_06325122_06326464 | RHOV | coding | upstream | 171224 | 6325122 ~ 6327542 (+) |
| CI01000325_06275779_06276922 | CHAC1 | coding | upstream | 221398 | 6272612 ~ 6277368 (+) |
| CI01000325_06262523_06270980 | DLL4 | coding | upstream | 227250 | 6262108 ~ 6272168 (+) |
| CI01000325_06583304_06591407 | FNTB | coding | downstream | 81326 | 6583304 ~ 6591733 (+) |
| CI01000325_06603583_06613761 | NA | coding | downstream | 101605 | 6603583 ~ 6613941 (+) |
| CI01000325_06655754_06657537 | NA | coding | downstream | 152732 | 6654710 ~ 6657621 (+) |
| CI01000325_06662207_06663957 | NA | coding | downstream | 160104 | 6662082 ~ 6664613 (+) |
| CI01000325_06668049_06675473 | GPR176 | coding | downstream | 166071 | 6668049 ~ 6675783 (+) |
| G466103 | NA | non-coding | upstream | 9893 | 6488077 ~ 6488873 (+) |
| G466114 | NA | non-coding | upstream | 13656 | 6482133 ~ 6485110 (+) |
| G466126 | NA | non-coding | upstream | 19904 | 6478628 ~ 6478862 (+) |
| G466119 | NA | non-coding | upstream | 31950 | 6466197 ~ 6466816 (+) |
| G466116 | NA | non-coding | upstream | 40695 | 6455843 ~ 6458071 (+) |
| G466133 | NA | non-coding | downstream | 99098 | 6601076 ~ 6716044 (+) |
| G466134 | NA | non-coding | downstream | 222410 | 6724388 ~ 6725749 (+) |
| G466293 | NA | non-coding | downstream | 469665 | 6971643 ~ 6974086 (+) |
| G466226 | NA | non-coding | downstream | 484593 | 6986571 ~ 6990460 (+) |
| G466237 | NA | non-coding | downstream | 491878 | 6993856 ~ 6997553 (+) |
| CI01000325_05655953_05691697 | PRIMA1 | other | upstream | 804783 | 5654840 ~ 5692630 (+) |
| CI01000325_05549713_05553140 | TMEM251 | other | upstream | 944189 | 5549713 ~ 5554577 (+) |
| G464950 | NA | other | upstream | 1407828 | 5058456 ~ 5090938 (+) |
| G463724 | NA | other | upstream | 3770316 | 2728206 ~ 2728450 (+) |
| G463566 | NA | other | upstream | 3935031 | 2563155 ~ 2563735 (+) |
| G466137 | NA | other | downstream | 115222 | 6617200 ~ 6619471 (+) |
| G466236 | NA | other | downstream | 501639 | 7003617 ~ 7004655 (+) |
| G466227 | NA | other | downstream | 810105 | 7312083 ~ 7314812 (+) |
| G466219 | NA | other | downstream | 980058 | 7482036 ~ 7486407 (+) |
| G466752 | NA | other | downstream | 2072138 | 8574116 ~ 8575210 (+) |
