G466293


Basic Information

Item Value
gene id G466293
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000325
NCBI id null
chromosome length 10587162
location 6971643 ~ 6974086 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU535259
CTGCACATGAACATATACATAATTTTTATTTGATTAAGTGGTATTACAATGAAAGTTGTGCCAAGAGAATAATCATTCATGTTACAATCACCTTTTGCACCCTTGCTCTATAATAATATGATTCATTTGAATATCACACATAATTTAATTCTCACTTTACTGTGAAACTGCAATGTCATTTTCATACAAATTATATGAACAACATCATGTTCAGGTCTTGATATTGCTTGTAGCAGTTTCAACTTCATCTTCCTCAGGGAAATGTGGCACTGATTTCTTGGCCACCACGTTATCCAGCCTCTGTCCCATCAGGTATGGATTTGCACTCCCTTTTTCTTCTTTTTGGCCCACCCTTCAGCTTTTCATACAACAGTCCTTTATTCTGAAAGACAAAAAATAGATATTTAGTGCAGTCTGTTACAGACCAGTATTTACACATTTGTACATTATGCATTCTCTGTACATTAACTGCTACAACGCACTCTCATGACAATTTGTAACTATTTTACATTTTGGCGAATTGGTGGCTAAGTTGTATGAATTCGTAAAATCTCATTTGTAACTTACTTTTTTCTAAAATTGAATCATACGAATTCATGCGAAGTCACCACCTCATAAAATCAAACTACCCTAAAACTAAACTACCCACTATGACACTAACATTTTTCAGAGAGGTAATTTAAGGTCCTTCTACACTTTTTTTATATTATATTGTTATTTTGTATTAAATTACATAGTTATTATGTAGTTAACTTGATTGATTTCACCAGTATGTACGTATGTAAGCACAGAAAAGTACCTGACAGAATCATCAATTAAATATTATGCTAATGCACAAAAATATGTTTTGACAGGTTGGTTACTTTTATCCTTCCAAATATGATTAGTACAATAAAAGTCTGATAACTGAGAGAAAGTAAAGTAACTTCAAATTACTTTTCACTAAATGAATCATTAATTTCATTTAAATTAAAACTCAGAAGTCTGCTCCGGCCTGTTTGAAGGTGTCAAGTGTGAACTTACCCACTTCGCTAGCGCAGGGTAGTCATGCTCAGGGTCAAAGAGATGCTGATGTTTCTGAAATTCTCGACTGAACTCTGCAGTGTCTGGAGAGTTCTCTAAACATCCATCAGCAGCTATAAAGACATGATCACATTTTAATGCTCCCCATTTTCAAACCATTCACAGAAGTTTAGAGTTGTCATACCTTTGGGGGAAAACGGTAAACTTTTCCTAAACAAATTTTATTCGCCTCAGAAAATGGATTCCTGGTTATTAGCTATGTGATTGATAATCTAAATGAATGGTGGCACCACTGTATATTTCTGTATTCGGTTGCATTTGGATGTGCATACCAGTCTTTCCAAGGGGGCAAGGATTGGGAGGGTCGGGATAACCATGGTCCTCACTGAAGTCTTTGGGAACACTGTCCCCAGTTAACTCTGCAACAATGTTAGGGATGTTCCCATAAGGCCCGAGATGTTGGAGTCCCTCATGGGCACCACCTATTGGACAAAGTGTAAATTACAGATAAAGATAACCGCGTAATGAGTATTATATAAAGGATAACCCTTTAAACTTTAAAGTTCTTTTATTCCCTATATAATCATTCACATCTTGTATACAAAGAAACTCTTACCTTGGATGCTGAGAGGACCCACTATGTTGGTGGCCTGGTGCGCGGGATACTCGACCCTTGGCCGCGCGATTCCCAGCTGCTCCATCACACCATGAAGCAGGCGCTGGATATCCGCCTCCGACACCTGATCCACCGTGCGTGGACTGCGGCCAGAAACGACGGCCATCGAGCTTATGATGACACTCAGAAGAACCGTGTGTGTCATTTTCGGAGCCGAACCCATTGTTGACGTTCACTACACCGACAATAAACAAAATTTTTTGCTGCGATGTATGCTAAAACGTTATATGTAAATAAAATATATACATTATTTTTATTATTTTATATTCACCGACCAAATAATGTAGAAACTGGGTTATAAATTTGATTATATGATCTATAATTTAGATATTATTGAGCTCATAGAAAACGCACATCCCTGAATGTAACTACGTCACAAGTAAACAGGCTTGATAAAAACATAGGCCGTTATTATATACTCGCACATTCAGAAAAATATTCGTTGTTCAGAAAAGCTAAACATCCAACGTGTTGTATAAAGAATAAATAGTTAACCAAATACAAAGGGATAACCTACCATGTAATCTGGATTGAGAGAGAGTGTGTCGGGTTCAACACAGATGCCGTCCTCCTCCTCCTCCTCC
>TU535263
CTGCACATGAACATATACATAATTTTTATTTGATTAAGTGGTATTACAATGAAAGTTGTGCCAAGAGAATAATCATTCATGTTACAATCACCTTTTGCACCCTTGCTCTATAATAATATGATTCATTTGAATATCACACATAATTTAATTCTCACTTTACTGTGAAACTGCAATGTCATTTTCATACAAATTATATGAACAACATCATGTTCAGGTCTTGATATTGCTTGTAGCAGTTTCAACTTCATCTTCCTCAGGGAAATGTGGCACTGATTTCTTGGCCACCACGTTATCCAGCCTCTGTCCCATCAGGTATGGATTTGCACTCTGAAACACAGTCAGTGACAGATCCTGTGACTTTTTACTGAAAATATGAGACATGTATGCAATGGTGGTCTATCTTATTCATGTTTTGATCTATTGAGAAAGATACAACCAAAATATACAAAGAAAAATAATGGTTTAGTTATATTCATATTTATAGAATACCCTTTTTCTTCTTTTTGGCCCACCCTTCAGCTTTTCATACAACAGTCCTTTATTCTGAAAGACAAAAAATAGATATTTAGTGCAGTCTGTTACAGACCAGTATTTACACATTTGTACATTATGCATTCTCTGTACATTAACTGCTACAACGCACTCTCATGACAATTTGTAACTATTTTACATTTTGGCGAATTGGTGGCTAAGTTGTATGAATTCGTAAAATCTCATTTGTAACTTACTTTTTTCTAAAATTGAATCATACGAATTCATGCGAAGTCACCACCTCATAAAATCAAACTACCCTAAAACTAAACTACCCACTATGACACTAACATTTTTCAGAGAGGTAATTTAAGGTCCTTCTACACTTTTTTTATATTATATTGTTATTTTGTATTAAATTACATAGTTATTATGTAGTTAACTTGATTGATTTCACCAGTATGTACGTATGTAAGCACAGAAAAGTACCTGACAGAATCATCAATTAAATATTATGCTAATGCACAAAAATATGTTTTGACAGGTTGGTTACTTTTATCCTTCCAAATATGATTAGTACAATAAAAGTCTGATAACTGAGAGAAAGTAAAGTAACTTCAAATTACTTTTCACTAAATGAATCATTAATTTCATTTAAATTAAAACTCAGAAGTCTGCTCCGGCCTGTTTGAAGGTGTCAAGTGTGAACTTACCCACTTCGCTAGCGCAGGGTAGTCATGCTCAGGGTCAAAGAGATGCTGATGTTTCTGAAATTCTCGACTGAACTCTGCAGTGTCTGGAGAGTTCTCTAAACATCCATCAGCAGCTATAAAGACATGATCACATTTTAATGCTCCCCATTTTCAAACCATTCACAGAAGTTTAGAGTTGTCATACCTTTGGGGGAAAACGGTAAACTTTTCCTAAACAAATTTTATTCGCCTCAGAAAATGGATTCCTGGTTATTAGCTATGTGATTGATAATCTAAATGAATGGTGGCACCACTGTATATTTCTGTATTCGGTTGCATTTGGATGTGCATACCAGTCTTTCCAAGGGGGCAAGGATTGGGAGGGTCGGGATAACCATGGTCCTCACTGAAGTCTTTGGGAACACTGTCCCCAGTTAACTCTGCAACAATGTTAGGGATGTTCCCATAAGGCCCGAGATGTTGGAGTCCCTCATGGGCACACCTTGGATGCTGAGAGGACCCACTATGTTGGTGGCCTGGTGCGCGGGATACTCGACCCTTGGCCGCGCGATTCCCAGCTGCTCCATCACACCATGAAGCAGGCGCTGGATATCCGCCTCCGACACCTGATCCACCGTGCGTGGACTGCGGCCAGAAACGACGGCCATCGAGCTTATGATGACACTCAGAAGAACCGTGTGTGTCATTTTCGGAGCCGAACCCATTGTTGACGTTCACTACACCGACAATAAACAAAATTTTTTGCTGCGATGTATGCTAAAACGTTATATGTAAATAAAATATATACATTATTTTTATTATTTTATATTCACCGACCAAATAATGTAGAAACTGGGTTATAAATTTGATTATATGATCTATAATTTAGATATTATTGAGCTCATAGAAAACGCACATCCCTGAATGTAACTACGTCACAAGTAAACAGGCTTGATAAAAACATAGGCCGTTATTATATACTCGCACATTCAGAAAAATATTCGTTGTTCAGAAAAGCTAAACATCCAACGTGTTGTATAAAGAATAAATAGTTAACCAAATACAAAGGGATAACCTACCATGTAATCTGGATTGAGAGAGAGTGTGTCGGGTTCAACACAGATGCCGTCCTCCTCCTCCTCCTCC
>TU535264
CTGCACATGAACATATACATAATTTTTATTTGATTAAGTGGTATTACAATGAAAGTTGTGCCAAGAGAATAATCATTCATGTTACAATCACCTTTTGCACCCTTGCTCTATAATAATATGATTCATTTGAATATCACACATAATTTAATTCTCACTTTACTGTGAAACTGCAATGTCATTTTCATACAAATTATATGAACAACATCATGTTCAGGTCTTGATATTGCTTGTAGCAGTTTCAACTTCATCTTCCTCAGGGAAATGTGGCACTGATTTCTTGGCCACCACGTTATCCAGCCTCTGTCCCATCAGGTATGGATTTGCACTCTGAAACACAGTCAGTGACAGATCCTGTGACTTTTTACTGAAAATATGAGACATGTATGCAATGGTGGTCTATCTTATTCATGTTTTGATCTATTGAGAAAGATACAACCAAAATATACAAAGAAAAATAATGGTTTAGTTATATTCATATTTATAGAATACCCTTTTTCTTCTTTTTGGCCCACCCTTCAGCTTTTCATACAACAGTCCTTTATTCCACTTCGCTAGCGCAGGGTAGTCATGCTCAGGGTCAAAGAGATGCTGATGTTTCTGAAATTCTCGACTGAACTCTGCAGTGTCTGGAGAGTTCTCTAAACATCCATCAGCAGCAGTCTTTCCAAGGGGGCAAGGATTGGGAGGGTCGGGATAACCATGGTCCTCACTGAAGTCTTTGGGAACACTGTCCCCAGTTAACTCTGCAACAATGTTAGGGATGTTCCCATAAGGCCCGAGATGTTGGTGGCCTGGTGCGCGGGATACTCGACCCTTGGCCGCGCGATTCCCAGCTGCTCCATCACACCATGAAGCAGGCGCTGGATATCCGCCTCCGACACCTGATCCACCGTGCGTGGACTGCGGCCAGAAACGACGGCCATCGAGCTTATGATGACACTCAGAAGAACCGTGTGTGTCATTTTCGGAGCCGAACCCATTGTTGACGTTCACTACACCGACATGTAATCTGGATTGAGAGAGAGTGTGTCGGGTTCAACACAGATGCCGTCCTCCTCCTCCTCCTCC
>TU535265
CTGCACATGAACATATACATAATTTTTATTTGATTAAGTGGTATTACAATGAAAGTTGTGCCAAGAGAATAATCATTCATGTTACAATCACCTTTTGCACCCTTGCTCTATAATAATATGATTCATTTGAATATCACACATAATTTAATTCTCACTTTACTGTGAAACTGCAATGTCATTTTCATACAAATTATATGAACAACATCATGTTCAGGTCTTGATATTGCTTGTAGCAGTTTCAACTTCATCTTCCTCAGGGAAATGTGGCACTGATTTCTTGGCCACCACGTTATCCAGCCTCTGTCCCATCAGGTATGGATTTGGGAGGGTCGGGATAACCATGGTCCTCACTGAAGTCTTTGGGAACACTGTCCCCAGTTAACTCTGCAACAATGTTAGGGATGTTCCCATAAGGCCCGAGATGTTGGAGTCCCTCATGGGCACCACCTTGGATGCTGAGAGGACCCACTATGTTGGTGGCCTGGTGCGCGGGATACTCGACCCTTGGCCGCGCGATTCCCAGCTGCTCCATCACACCATGAAGCAGGCGCTGGATATCCGCCTCCGACACCTGATCCACCGTGCGTGGACTGCGGCCAGAAACGACGGCCATCGAGCTTATGATGACACTCAGAAGAACCGTGTGTGTCATTTTCGGAGCCGAACCCATTGTTGACGTTCACTACACCGACAATAAACAAAATTTTTTGCTGCGATGTATGCTAAAACATGTAATCTGGATTGAGAGAGAGTGTGTCGGGTTCAACACAGATGCCGTCCTCCTCCTCCTCCTCC

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU535259 False 2283 lncRNA 0.37 2 6971643 6974086
TU535263 False 2309 lncRNA 0.37 2 6971643 6974086
TU535264 False 1068 lncRNA 0.44 5 6971643 6974086
TU535265 True 795 lncRNA 0.46 4 6971643 6974086

Neighbor

gene id symbol gene type direction distance location
CI01000325_06968745_06969351 NA coding upstream 1672 6968745 ~ 6969971 (+)
CI01000325_06951886_06963827 FMN1 coding upstream 7801 6951819 ~ 6963842 (+)
CI01000325_06834601_06853645 NA coding upstream 117598 6834601 ~ 6854045 (+)
CI01000325_06825337_06828681 EMC7 coding upstream 142953 6825337 ~ 6828690 (+)
CI01000325_06820878_06823500 KATNBL1 coding upstream 147923 6820878 ~ 6823720 (+)
CI01000325_07037122_07051586 YWHAZ, 1433B, 143B2, YWHAQ, YWHAQA, YWHAQB, YWHABA, YWHABB, YWHAB coding downstream 62805 7036891 ~ 7051610 (+)
CI01000325_07053839_07064829 ADAM17 coding downstream 79753 7053839 ~ 7064851 (+)
CI01000325_07077438_07097577 ASAP2B, ASAP2, ASAP3 coding downstream 103352 7077438 ~ 7097999 (+)
CI01000325_07120140_07136417 MBOAT2B, MBOAT2 coding downstream 146054 7120140 ~ 7136501 (+)
CI01000325_07140324_07162617 KIDINS220B, KIDINS220 coding downstream 166238 7140324 ~ 7163663 (+)
G466134 NA non-coding upstream 245894 6724388 ~ 6725749 (+)
G466133 NA non-coding upstream 255599 6601076 ~ 6716044 (+)
G466103 NA non-coding upstream 482770 6488077 ~ 6488873 (+)
G466114 NA non-coding upstream 486533 6482133 ~ 6485110 (+)
G466126 NA non-coding upstream 492781 6478628 ~ 6478862 (+)
G466226 NA non-coding downstream 12485 6986571 ~ 6990460 (+)
G466237 NA non-coding downstream 19770 6993856 ~ 6997553 (+)
G466307 NA non-coding downstream 56169 7030255 ~ 7030479 (+)
G466308 NA non-coding downstream 57095 7031181 ~ 7031411 (+)
G466234 NA non-coding downstream 127496 7101582 ~ 7101927 (+)
G466137 NA other upstream 352172 6617200 ~ 6619471 (+)
G466144 NA other upstream 469665 6498766 ~ 6501978 (+)
CI01000325_05655953_05691697 PRIMA1 other upstream 1277660 5654840 ~ 5692630 (+)
CI01000325_05549713_05553140 TMEM251 other upstream 1417066 5549713 ~ 5554577 (+)
G464950 NA other upstream 1880705 5058456 ~ 5090938 (+)
G466236 NA other downstream 29531 7003617 ~ 7004655 (+)
G466227 NA other downstream 337997 7312083 ~ 7314812 (+)
G466219 NA other downstream 507950 7482036 ~ 7486407 (+)
G466752 NA other downstream 1600030 8574116 ~ 8575210 (+)
CI01000325_08732866_08734588 NA other downstream 1758428 8732514 ~ 8734758 (+)

Expression


Co-expression Network