XLOC_013277


Basic Information

Item Value
gene id XLOC_013277
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007129.7
NCBI id CM002902.2
chromosome length 51023478
location 12346296 ~ 12354274 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00026957
ACCAGATGCTTTGGACAGCCCCATGAACCCAGCGCTTGCAAAGCCCCAAACCTCACATTCATCCTCGGAGAGAGCAGCTGAAGAGACAGAACCAGAACAGGATTCAGTTGATGTGTTTACAAGTCTCCCAGAAGCATTTATGGAGAAAGTTACTGGGGCTAGACTTGCTTATGTTCGTCTGCAAAACTTAAGCAAAGCTGCAGGAAGGTCTCTGGAGGTCAAGGTCTCTTGGATCATTTGCATGGAATTTTGGGAGCTATGATGGTGTCCTGAAATGCTTTGGTGTATTGGGATCTCATCCATAAACTGGAGTTTCAACATCTGATTTGGATACAAAAAGCCTTTGTATTTCCTAAAAAAAGGAGTGGTTTGTAGCTCCCGGCGTGATGCATGGGCTCCCGTGCTCAGCTCTGCAGCACTGTTTTGGTGGTCCTCCAGATGTTTCTGCTGACCCGGCTCCATATCCAGACCCAGAACTGTGCAAAACTGGGTCAGATCCTGCTACGGGCCCAGTCGTTCTCACTCAGCCTGGTCCTGTAAAGCCAACAAGGACTGACAGCCAGCCTTCAATGGGTTGCATTTCCATCCAGACCAAGACTAACGGGACTCACTCCAAAACCAAAGAGCCAAATGCGGACCACCAGCACACGCTTCATTCCTACCCCAGCTCAGAGGGGCTCTCAGAGGAAGACGATGTCCAGGATAATAGCCCTGTTCTGGACACAAAACGACCACATATTCCCCGTCCATCCATCATTAGACCACAAAAGGAACACCCAATCCGAGACAACCTGCCAGGCAGAACAGATTATATTGAGCCAGAAGATGGGTCGTTATCAGgtactgcaaacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacactcacacacacacacacacacacacacacacacacactcactctcacacacacacacacacacacacacacacacacacacacacacacacaaacacacacacacacacaaatgtttattgtggtggtttataaggactctccataggcatcATGtgtttaagtatgatttttaagcgctttgaattatgaggacacagaGCACGTTTTCGTAAACCATGTGAACAGTGCAATTCCTTGGTCATAGCCATGTTATTATGCTGATTTTGTCCTTGTAAACTATATAAAACAGCACATACACAAatgttggttttggtggtttatgaggactctc
>TCONS_00027271
CAGAACCAGAACAGGATTCAGTTGATGTGTTTACAAGTCTCCCAGAAGCATTTATGGAGAAAGTTACTGGGGCTAGACTTGCTTATGTTCGTCTGCAAAACTTAAGCAAAGCTGCAGGAAGGTCTCTGGAGGTCAAGGTCTCTTGGATCATTTGCATGGAATTTTGGGAGCTATGATGGTGTCCTGAAATGCTTTGGTGTATTGGGATCTCATCCATAAACTGGAGTTTCAACATCTGATTTGGATACAAAAAGCCTTTGTATTTCCTAAAAAAAGGAGTGGTTTGTAGCTCCCGGCGTGATGCATGGGCTCCCGTGCTCAGCTCTGCAGCACTGTTTTGGTGGTCCTCCAGATGTTTCTGCTGACCCGGCTCCATATCCAGACCCAGAACTGTGCAAAACTGGGTCAGATCCTGCTACGGGCCCAGTCGTTCTCACTCAGCCTGGTCCTGTAAAGCCAACAAGGACTGACAGCCAGCCTTCAATGGGTTGCATTTCCATCCAGACCAAGACTAACGGGACTCACTCCAAAACCAAAGAGCCAAATGCGGACCACCAGCACACGCTTCATTCCTACCCCAGCTCAGAGGGGCTCTCAGAGGAAGACGATGTCCAGGATAATAGCCCTGTTCTGGACACAAAACGACCACATATTCCCCGTCCATCCATCATTAGACCACAAAAGGATGATGCCATCAACAAGAAGATGA

Function

GO:

id name namespace
GO:0007166 cell surface receptor signaling pathway biological_process
GO:0098803 respiratory chain complex cellular_component
GO:0005743 mitochondrial inner membrane cellular_component
GO:0005746 mitochondrial respirasome cellular_component
GO:0044455 obsolete mitochondrial membrane part cellular_component
GO:0070069 cytochrome complex cellular_component
GO:1990204 oxidoreductase complex cellular_component
GO:0045277 respiratory chain complex IV cellular_component
GO:0070469 respirasome cellular_component
GO:0098798 mitochondrial protein-containing complex cellular_component
GO:0098800 inner mitochondrial membrane protein complex cellular_component
GO:0015002 heme-copper terminal oxidase activity molecular_function
GO:0004129 cytochrome-c oxidase activity molecular_function
GO:0016675 oxidoreductase activity, acting on a heme group of donors molecular_function
GO:0016676 oxidoreductase activity, acting on a heme group of donors, oxygen as acceptor molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00026957 False 1259 lncRNA 0.47 2 12346296 12354274
TCONS_00027271 True 709 lncRNA 0.48 2 12351884 12354188

Neighbor

gene id symbol gene type direction distance location
XLOC_013276 fam107b coding downstream 18818 12276567 ~ 12327478 (-)
XLOC_013275 nup205 coding downstream 75448 12236044 ~ 12270848 (-)
XLOC_013274 zgc:110789 coding downstream 294164 12034985 ~ 12052132 (-)
XLOC_013273 NA coding downstream 629974 11713285 ~ 11716322 (-)
XLOC_013272 CRACR2A coding downstream 750729 11556620 ~ 11595567 (-)
XLOC_013278 NA coding upstream 4109 12358383 ~ 12363329 (-)
XLOC_013279 si:ch211-1e14.1 coding upstream 10459 12364733 ~ 12453550 (-)
XLOC_013280 hipk2 coding upstream 110187 12464461 ~ 12654011 (-)
XLOC_013281 AL929229.2 coding upstream 177772 12532046 ~ 12532160 (-)
XLOC_013282 BX247877.1 coding upstream 406528 12760802 ~ 12765452 (-)
XLOC_013384 BX323829.1 misc upstream 7187828 19542102 ~ 19542231 (-)
XLOC_013271 NA non-coding downstream 790660 11416718 ~ 11555636 (-)
XLOC_013268 NA non-coding downstream 1421092 10921197 ~ 10925204 (-)
XLOC_013266 CR450781.1 non-coding downstream 1904838 10441343 ~ 10441458 (-)
XLOC_013264 LO018242.1 non-coding downstream 2266092 10080090 ~ 10080204 (-)
XLOC_013284 NA non-coding upstream 508330 12862604 ~ 12863523 (-)
XLOC_013286 CT573465.1 non-coding upstream 591343 12945617 ~ 12945731 (-)

Expression


Co-expression Network