XLOC_013296 (hsbp1b)


Basic Information

Item Value
gene id XLOC_013296
gene name hsbp1b
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007129.7
NCBI id CM002902.2
chromosome length 51023478
location 14334123 ~ 14337458 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00026300
CTCCGTGATTTAGCCAACAGCTGATCTGAAGAAAGCAAAGGGTTGGGTAGATACACAATTTTAGGAATAATTAACACATTTTACACGTCTACAAATCTATTTAGTTAAATAATATGGCAGAGACAGACCCAAAATCAGTGCAGGATCTCACAGCAGTGGTGCAGACATTACTGCAGCAGATGCAGGATAAGTTCCAGACAATGTCAGACCAGATCATCGGGAGAATTGATGAAATGAGCACCCGCATTGATGACCTGGAGAAGAATATAGCAGACCTGATGACTCAGGCAGGAGTGGAAGAGATTGAAGGAGAGAACAAGGTCAAAGAGGGAGACGCCTCCTAGTAGAGGATGCAGAGTTGAACGAATAAAACTATACACACACTCTTCAGGAGCAGCAAGATTCTCTCTATGGTGACTAACATATTTTGGTTTGATGtgttgctttttttaataatgtagAAGGAATTAAAGTCAGTCTTAATGCTGTGACTGTATGCTTTTCCTTTTTCCTCAAAGAACTTTTTAAACATGACATCCAACTGTAGAGCCGAATCCTGCGTTACTGTAATAACAGCACTAGCCCAAGTGCCAACCTATCACCATTCCTGTTAAAGCCAGTTTGTTGTTGAATTAAAAGTTGTTTCTTAAATCCCTTGTCCTCATCTGTCTGTATTCAACTGTTCACCAAATCATCTCTTTTATCATTACCTTAATTATTCTGGGAATTTTCTTGCCCGCAGCTCTATGGTTTAGTTctaactgtaaataaacacacctgatcaaa
>TCONS_00026301
GGTGCAGACATTACTGCAGCAGATGCAGGATAAGTTCCAGACAATGTCAGACCAGATCATCGGGAGAATTGATGAAATGAGCACCCGCATTGATGACCTGGAGAAGAATATAGCAGACCTGATGACTCAGGCAGGAGTGGAAGAGATTGAAGGAGAGAACAAGGTCAAAGAGGGAGACGCCTCCTAGTAGAGGATGCAGAGTTGAACGAATAAAACTATACACACACTCTTCAGGAGCAGCAAGATTCTCTCTATGAACTTTTTAAACATGACATCCAACTGTAGAGCCGAATCCTGCGTTACTGTAATAACAGCACTAGCCCAAGTGCCAACCTATCACCATTCCTGTTAAAGCCAGTTTGTTGTTGAATTAAAAGTTGTTTCTTAAA
>TCONS_00026302
TGTCGCAACTCCGTGATTTAGCCAACAGCTGATCTGAAGAAAGCAAAGGGTTGGGTAGATACACAATTTTAGGAATAATTAACACATTTTACACGTCTACAAATCTATTTAGTTAAATAATATGGCAGAGACAGACCCAAAATCAGTGCAGGATCTCACAGCAGTGGTGCAGACATTACTGCAGCAGATGCAGGATAAGTTCCAGACAATGTCAGACCAGATCATCGGGAGAAATATCCTTTCCTTTCTTGTTTATAATATATCTTCAGCGATTTTCAAGAAAGCTTATTAAGAGATTGCACATCGCAGTTTAAAAggctagttcacccaataatgagtGTGATGGGAGCAATTATGTGATGAAATTCCTGCTAACTGTTTTCGCttctttacactttaaaaccaatgTACCAAAAGAACTTGTGATTCAAACTCTTTCtctcttctgttacacacaaaaaaagatattttgaaaaatcctgcaacttttcactttcatattatttgtttttcctactgtggaggtcaatggttacaggttttcagcttaaacttctcaacagaagaaagaaacccataaagattTGGAGCAACCTGAGGGTAA

Function

symbol description
hsbp1b Predicted to enable serine-type endopeptidase activity. Acts upstream of or within central nervous system development and neural crest formation. Is expressed in head. Orthologous to human HSBP1 (heat shock factor binding protein 1).

GO:

id name namespace
GO:0014029 neural crest formation biological_process
GO:0007417 central nervous system development biological_process
GO:0004252 serine-type endopeptidase activity molecular_function
GO:0003714 transcription corepressor activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040426-1721 Predicted to enable serine-type endopeptidase activity. Acts upstream of or within central nervous system development and neural crest formation. Is expressed in head. Orthologous to human HSBP1 (heat shock factor binding protein 1).

Ensembl:

ensembl_id ENSDARG00000041921

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00026300 False 786 mRNA 0.39 4 14334123 14337450
TCONS_00026301 False 389 mRNA 0.43 4 14334258 14337065
TCONS_00026302 True 604 processed_transcript 0.37 2 14336627 14337458

Neighbor

gene id symbol gene type direction distance location
XLOC_013295 mlycd coding downstream 59320 14233553 ~ 14274803 (-)
XLOC_013294 BX950204.1 coding downstream 789756 13544250 ~ 13544367 (-)
XLOC_013293 BX890576.1 coding downstream 855901 13477102 ~ 13478222 (-)
XLOC_013292 cmip coding downstream 971197 13324140 ~ 13362926 (-)
XLOC_013291 BX511124.1 coding downstream 1046472 13281654 ~ 13287651 (-)
XLOC_013297 si:dkey-238o13.4 coding upstream 334331 14671789 ~ 14677936 (-)
XLOC_013298 pdf coding upstream 351185 14688643 ~ 14691727 (-)
XLOC_013299 tshz3a coding upstream 394326 14731784 ~ 14743659 (-)
XLOC_013300 NA coding upstream 426445 14763903 ~ 14765883 (-)
XLOC_013301 mtss1la coding upstream 435016 14772474 ~ 14836862 (-)
XLOC_013384 BX323829.1 misc upstream 5204644 19542102 ~ 19542231 (-)
XLOC_013288 NA non-coding downstream 1219805 13077843 ~ 13114318 (-)
XLOC_013286 CT573465.1 non-coding downstream 1388392 12945617 ~ 12945731 (-)
XLOC_013308 BX649610.1 non-coding upstream 698693 15036151 ~ 15036269 (-)
XLOC_013310 NA non-coding upstream 850559 15188017 ~ 15191812 (-)
XLOC_013319 BX928740.1 non-coding upstream 1250629 15588087 ~ 15588201 (-)
XLOC_013321 CR854977.1 non-coding upstream 1538204 15875662 ~ 15875780 (-)

Expression


Co-expression Network