XLOC_013300



Basic Information


Item Value
gene id XLOC_013300
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information


Item Value
chromosome id NC_007129.7
NCBI id CM002902.2
chromosome length 51023478
location 14763903 ~ 14765883 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence


>TCONS_00027275
CCTcccctcctctcctctcctcctgATGGACGGGACCCCCACACTCCGCTCCGGGCTACACATACAGGGATGTGACACTGGTGCGCATCCCGCCGTCAGTCGCACAGCAAAGTGGCACGCGTGTCATTTTCCCTGACAGACGCGCTCGTCTGCCTATCCACGCTCCTCCGCTGCAAATGCGGGACATGACTGTATACTGATGGAGGCACGTCGCAAACAAGACAGCGCAGCAGAAATAAACACATCTTGAGCAATGCGATCTGATCTGGAGGACGGGGGGTGTTTAGAGAGGGTCAGCCTGAAAAGAGCTGCACAGGGTCACTTGGggccggagtgggactctttttcagccctggagtttcaagccttagaccggcccacctcagttcaccactgactatattaaaataaggtcatttccaattcag

Function


GO:

id name namespace
GO:0048729 tissue morphogenesis biological_process
GO:0060070 canonical Wnt signaling pathway biological_process
GO:0048731 system development biological_process
GO:0019219 regulation of nucleobase-containing compound metabolic process biological_process
GO:0019222 regulation of metabolic process biological_process
GO:0021546 rhombomere development biological_process
GO:0080090 regulation of primary metabolic process biological_process
GO:0002009 morphogenesis of an epithelium biological_process
GO:0018130 heterocycle biosynthetic process biological_process
GO:0006351 transcription, DNA-templated biological_process
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0051171 regulation of nitrogen compound metabolic process biological_process
GO:0030154 cell differentiation biological_process
GO:0048513 animal organ development biological_process
GO:0021593 rhombomere morphogenesis biological_process
GO:0021594 rhombomere formation biological_process
GO:0009058 biosynthetic process biological_process
GO:0009059 macromolecule biosynthetic process biological_process
GO:0001501 skeletal system development biological_process
GO:0198738 cell-cell signaling by wnt biological_process
GO:1901576 organic substance biosynthetic process biological_process
GO:0009887 animal organ morphogenesis biological_process
GO:0007275 multicellular organism development biological_process
GO:0009888 tissue development biological_process
GO:0009889 regulation of biosynthetic process biological_process
GO:0097659 nucleic acid-templated transcription biological_process
GO:0031323 regulation of cellular metabolic process biological_process
GO:0060429 epithelium development biological_process
GO:0031325 positive regulation of cellular metabolic process biological_process
GO:0031326 regulation of cellular biosynthetic process biological_process
GO:0048562 embryonic organ morphogenesis biological_process
GO:0048568 embryonic organ development biological_process
GO:0009653 anatomical structure morphogenesis biological_process
GO:0048856 anatomical structure development biological_process
GO:0051252 regulation of RNA metabolic process biological_process
GO:0048859 formation of anatomical boundary biological_process
GO:1903506 regulation of nucleic acid-templated transcription biological_process
GO:0021654 rhombomere boundary formation biological_process
GO:1901362 organic cyclic compound biosynthetic process biological_process
GO:0048598 embryonic morphogenesis biological_process
GO:0010467 gene expression biological_process
GO:0010468 regulation of gene expression biological_process
GO:0048869 cellular developmental process biological_process
GO:0044249 cellular biosynthetic process biological_process
GO:0009952 anterior/posterior pattern specification biological_process
GO:0044271 cellular nitrogen compound biosynthetic process biological_process
GO:0060255 regulation of macromolecule metabolic process biological_process
GO:0003261 cardiac muscle progenitor cell migration to the midline involved in heart field formation biological_process
GO:0007389 pattern specification process biological_process
GO:0032501 multicellular organismal process biological_process
GO:2001141 regulation of RNA biosynthetic process biological_process
GO:0032502 developmental process biological_process
GO:0032774 RNA biosynthetic process biological_process
GO:0019438 aromatic compound biosynthetic process biological_process
GO:0010556 regulation of macromolecule biosynthetic process biological_process
GO:0034645 cellular macromolecule biosynthetic process biological_process
GO:0034654 nucleobase-containing compound biosynthetic process biological_process
GO:2000112 regulation of cellular macromolecule biosynthetic process biological_process
GO:0009790 embryo development biological_process
GO:0016055 Wnt signaling pathway biological_process
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0003690 double-stranded DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0000976 transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000977 RNA polymerase II transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000978 RNA polymerase II cis-regulatory region sequence-specific DNA binding molecular_function
GO:0000987 cis-regulatory region sequence-specific DNA binding molecular_function
GO:0140110 transcription regulator activity molecular_function
GO:0001067 regulatory region nucleic acid binding molecular_function
GO:1990837 sequence-specific double-stranded DNA binding molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA


RNA id representative length rna type GC content exon number start site end site
TCONS_00027275 True 428 lncRNA 0.56 2 14763903 14765883

Neighbor


gene id symbol gene type direction distance location
XLOC_013299 tshz3a coding downstream 20244 14731784 ~ 14743659 (-)
XLOC_013298 pdf coding downstream 72176 14688643 ~ 14691727 (-)
XLOC_013297 si:dkey-238o13.4 coding downstream 85967 14671789 ~ 14677936 (-)
XLOC_013296 hsbp1b coding downstream 426445 14334123 ~ 14337458 (-)
XLOC_013295 mlycd coding downstream 489100 14233553 ~ 14274803 (-)
XLOC_013301 mtss1la coding upstream 6591 14772474 ~ 14836862 (-)
XLOC_013302 mapk12a coding upstream 78786 14844669 ~ 14860435 (-)
XLOC_013303 selenoo1 coding upstream 97524 14863407 ~ 14879135 (-)
XLOC_013304 trabd coding upstream 119662 14885545 ~ 14901480 (-)
XLOC_013305 panx2 coding upstream 140687 14906570 ~ 14922872 (-)
XLOC_013384 BX323829.1 misc upstream 4776219 19542102 ~ 19542231 (-)
XLOC_013294 BX950204.1 non-coding downstream 1219536 13544250 ~ 13544367 (-)
XLOC_013293 BX890576.1 non-coding downstream 1285681 13477102 ~ 13478222 (-)
XLOC_013291 BX511124.1 non-coding downstream 1476252 13281654 ~ 13287651 (-)
XLOC_013288 NA non-coding downstream 1649585 13077843 ~ 13114318 (-)
XLOC_013286 CT573465.1 non-coding downstream 1818172 12945617 ~ 12945731 (-)
XLOC_013308 BX649610.1 non-coding upstream 270268 15036151 ~ 15036269 (-)
XLOC_013310 NA non-coding upstream 422134 15188017 ~ 15191812 (-)
XLOC_013319 BX928740.1 non-coding upstream 822204 15588087 ~ 15588201 (-)
XLOC_013321 CR854977.1 non-coding upstream 1109779 15875662 ~ 15875780 (-)
XLOC_013323 NA non-coding upstream 1173378 15939261 ~ 15970573 (-)

Expression



Co-expression Network