XLOC_013301 (mtss1la)


Basic Information

Item Value
gene id XLOC_013301
gene name mtss1la
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007129.7
NCBI id CM002902.2
chromosome length 51023478
location 14772474 ~ 14836862 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00026307
ACTGTTTTAATGAGTCCATCAGGCCTCACTCTTACACTCTTCCTGCGTCCCCTTCATATAATCAATCCCCAGGATCAAACTCCCCTTCACCCACAGCAAAGGTTCCTTACTGGAAGCAGGACTGGTCAAAGGTCGGTCAGTACGAGCAGTTATCTGTCGGTCAGCAGCGCAGGACTGAAGCTGCAGAGCCCTCTAGTGGAGCAGgaggacatacacacacacacccagaggACACTTACAGGCTTGCTAGGATGAACTCTAAAGATGCCACTGCCAAGCATGGTAAGCTGGTGTCGTCGGCCGCTAGTGAGCTGGCTATGGTTCTGACCCGTGGCCTGAGTATAGAGCAGACGCAGAAGAGCAGCTGTGACTCTCTGCAGTACTCCAGTGGATACAGCACACAAAACACCACACCATCCTGCTCGGAGGACACCATCCCCTCACAGGGATCTGAATATGATTGTTATTCCATGAACGGTGACGCTGATAATGACACACAAACAGACTTTGACAAGTCCTCAACCGTCCCTCGCCACAGCAACCTGGCCCAAAACTACCGGCGAATGATCCAGACTAAGAGGCCAGCCAGCACAGCTGGGCTTCATGGAGCACTGGCCGGCCCTACAACCAATGGGAAAGGAAGTAGCATCATCGCCTCAGGAACAGCCACCATTCGTAGAACCCCTTCGTCCAAAACAAACGTGAGGCGCACCCCATCCACTGTGGGTCCCATTCCCATCCGGCCACCAATAGTCCCGGTAAAGACGCCAACTGTCCCAGACTCACCTGGATTCCTCAGCCCTCCTCCAGAGCACAATGGAAGCGAGGAAAGCTTGTATAATGACGACTCGATGGAAATACTAGAGTACAAAGCTTCTCCAAAGCGAATGAGTCTGCCAACATGGGGATCTGGGGGCGGAAGCGTCTACTCCCAACCGCCTGGAGCTGCGGGCTTCAGTTCAGAAGAAGACCAGATACTTGCTGCCAATCGCCATAGTCTGGTGGAGAAGATTGGAGAGCTGGTGGCTAATGCTCACGCTCTGGGCGAAGGCCAGTTTCCGTTCCCAGCAGATCCTCTGGCTGACCAGAGCCTCCAGCAGGATGAAGGGCATGAGAAGGGAGGAGAGGACATGCTGAAGACCATCCGCAGAGGGGTGCGTCTCAGGAAAGTGAGTTCCAATGACAGATCTGCACCAAGGATCATGCGATAG
>TCONS_00026308
ATGGAGAGTGTGGAGAAGGAGTGCGGGGCTCTAGGTGGATTGTTTCAGGCGATCGTCAATGATATGAAGTACTCCTATCCAGTGTGGGAAGACTTCATCACAAAGGCCACCAAACTGCACTCCCAGCTAAGAACCACAGTGTTGGCGACCGCAGCGTTTCTTGATGCGTTTCAGAAGGTGGCAGACATGGCAACCAATACCAGAGGTGCCACCAGGGATATCGGCTCGGCTTTGACCCGGATGTGCATGCGACACCGCAGCATCGAAGCCAAACTGCGCCACTTCACCAATGCTCTAATGGAAAAAATGATTGGCCCACTCCAAGACAAGATTGAAGAGTGGAAGAAAACTGCAGCTCTGCTTGATAAAGACCATGCCAAAGAGTACAAGCGCTCCAGGCAGGAGATCAAGAAGAAGTCATCTGACACAATAAAGCTCCAGAAGAAAGCTAGAAAAGAACTACCAGGTCGAGGAGGTCTTCAGCCACAGCTAAACAGTGCCATGCAGGATGTGAATGACATGTACCTGCTGATGGAGGAGACGGAGAAGCAGGCTGTGCGTCGAGCTCTGCTGGAGGAGAGGGGAAGATACTGCACCTTCATCAGCTTCCTGCAGCCTGTGGTGGTGGGTGAAATTGCCATGCTGGGAGAAGCTACTCATCTTCAGGCCATCATTGAAGATCTCACAGTGTTGACCACTGACCCACACAAACTACCAGAGGCTAGTGAACAgGTGATTTTGGATCTTAAAGGCTCTGATTATAATTGGTCCTACCAGACGCCTCCTTCCTCTCCCAGCAGCATCGGATCCAGAAAGAGCAGCCTTTGCAGTTTGGTTCACCTTCCACCGGGTGGTGCTCATCGTCTGAGCAGCGTCTCCTCTCATGATTCTGGATTCGTCTCTCAAGACGCAAATGTTCACTCCAAACCCCCCTCCCCGATGCCATCTGACATCACCAGCCAGAAGTCATCCAGTTCTGCATCCTCAGAGGCTTCAGaaacctgtcagtcagtcagtgagtgcGGCTCTCCCACAATATTGGGCTCATCCTTTGCTACCTTTCGCCCGTCTCACTGTTTTAATGAGTCCATCAGGCCTCACTCTTACACTCTTCCTGCGTCCCCTTCATATAATCAATCCCCAGGATCAAACTCCCCTTCACCCACAGCAAAGGTTCCTTACTGGAAGCAGGACTGGTCAAAGGTCGGTCAGTACGAGCAGTTATCTGTCGGTCAGCAGCGCAGGACTGAAGCTGCAGAGCCCTCTAGTGGAGCAGgaggacatacacacacacacccagaggACACTTACAGGCTTGCTAGGATGAACTCTAAAGATGCCACTGCCAAGCATGGTAAGCTGGTGTCGTCGGCCGCTAGTGAGCTGGCTATGGTTCTGACCCGTGGCCTGAGTATAGAGCAGACGCAGAAGAGCAGCTGTGACTCTCTGCAGTACTCCAGTGGATACAGCACACAAAACACCACACCATCCTGCTCGGAGGACACCATCCCCTCACAGGGATCTGAATATGATTGTTATTCCATGAACGGTGACGCTGATAATGACACACAAACAGACTTTGACAAGTCCTCAACCGTCCCTCGCCACAGCAACCTGGCCCAAAACTACCGGCGAATGATCCAGACTAAGAGGCCAGCCAGCACAGCTGGGCTTCATGGAGCACTGGCCGGCCCTACAACCAATGGGAAAGGAAGTAGCATCATCGCCTCAGGAACAGCCACCATTCGTAGAACCCCTTCGTCCAAAACAAACGTGAGGCGCACCCCATCCACTGTGGGTCCCATTCCCATCCGGCCACCAATAGTCCCGGTAAAGACGCCAACTGTCCCAGACTCACCTGGATTCCTCAGCCCTCCTCCAGAGCACAATGGAAGCGAGGAAAGCTTGTATAATGACGACTCGATGGAAATACTAGAGTACAAAGCTTCTCCAAAGCGAATGAGTCTGCCAACATGGGGATCTGGGGGCGGAAGCGTCTACTCCCAACCGCCTGGAGCTGCGGGCTTCAGTTCAGAAGAAGACCAGATACTTGCTGCCAATCGCCATAGTCTGGTGGAGAAGATTGGAGAGCTGGTGGCTAATGCTCACGCTCTGGGCGAAGGCCAGTTTCCGTTCCCAGCAGATCCTCTGGCTGACCAGAGCCTCCAGCAGGATGAAGGGCATGAGAAGGGAGGAGAGGACATGCTGAAGACCATCCGCAGAGGGGTGCGTCTCAGGAAAGTGAGTTCCAATGACAGATCTGCACCAAGGATCATGCGATAG
>TCONS_00026309
CCTTCATCACCGCCTGGATAACGGGCACAGAGCCACCCGACAGCCTCAATTGTTGTTTCCATTTTGCCGACATCTGCTGCGTGTTGCTTACATTTACACCCGAAGCAACAAGAGTTTGATGTTAGGATGTGATGGACCACTTTCAGCACAGACCCTGAAAAGAACAACCAGCTTTTTTCTCGGGGGGGATCCGAATATTTCTTCCAGCcgatttttgttcattcattgggAGCAGAACAACAATCCGGGGCTCGGTGACATGATGGAGAGTGTGGAGAAGGAGTGCGGGGCTCTAGGTGGATTGTTTCAGGCGATCGTCAATGATATGAAGTACTCCTATCCAGTGTGGGAAGACTTCATCACAAAGGCCACCAAACTGCACTCCCAGCTAAGAACCACAGTGTTGGCGACCGCAGCGTTTCTTGATGCGTTTCAGAAGGTGGCAGACATGGCAACCAATACCAGAGGTGCCACCAGGGATATCGGCTCGGCTTTGACCCGGATGTGCATGCGACACCGCAGCATCGAAGCCAAACTGCGCCACTTCACCAATGCTCTAATGGAAAAAATGATTGGCCCACTCCAAGACAAGATTGAAGAGTGGAAGAAAACTGCAGCTCTGCTTGATAAAGACCATGCCAAAGAGTACAAGCGCTCCAGGCAGGAGATCAAGAAGAAGTCATCTGACACAATAAAGCTCCAGAAGAAAGCTAGAAAAGGTCGAGGAGGTCTTCAGCCACAGCTAAACAGTGCCATGCAGGATGTGAATGACATGTACCTGCTGATGGAGGAGACGGAGAAGCAGGCTGTGCGTCGAGCTCTGCTGGAGGAGAGGGGAAGATACTGCACCTTCATCAGCTTCCTGCAGCCTGTGGTGGTGGGTGAAATTGCCATGCTGGGAGAAGCTACTCATCTTCAGGCCATCATTGAAGATCTCACAGTGTTGACCACTGACCCACACAAACTACCAGAGGCTAGTGAACAgGTGATTTTGGATCTTAAAGGCTCTGATTATAATTGGTCCTACCAGACGCCTCCTTCCTCTCCCAGCAGCATCGGATCCAGAAAGAGCAGCCTTTGCAGTTTGGTTCACCTTCCACCGGGTGGTGCTCATCGTCTGAGCAGCGTCTCCTCTCATGATTCTGGATTCGTCTCTCAAGACGCAAATGTTCACTCCAAACCCCCCTCCCCGATGCCATCTGACATCACCAGCCAGAAGTCATCCAGTTCTGCATCCTCAGAGGCTTCAGaaacctgtcagtcagtcagtgagtgcGGCTCTCCCACAATACAGGACTGGTCAAAGGTCGGTCAGTACGAGCAGTTATCTGTCGGTCAGCAGCGCAGGACTGAAGCTGCAGAGCCCTCTAGTGGAGCAGgaggacatacacacacacacccagaggACACTTACAGGCTTGCTAGGATGAACTCTAAAGATGCCACTGCCAAGCATGGTAAGCTGGTGTCGTCGGCCGCTAGTGAGCTGGCTATGGTTCTGACCCGTGGCCTGAGTATAGAGCAGACGCAGAAGAGCAGCTGTGACTCTCTGCAGTACTCCAGTGGATACAGCACACAAAACACCACACCATCCTGCTCGGAGGACACCATCCCCTCACAGGGATCTGAATATGATTGTTATTCCATGAACGGTGACGCTGATAATGACACACAAACAGACTTTGACAAGTCCTCAACCGTCCCTCGCCACAGCAACCTGGCCCAAAACTACCGGCGAATGATCCAGACTAAGAGGCCAGCCAGCACAGCTGGGCTTCATGGAGCACTGGCCGGCCCTACAACCAATGGGAAAGGAAGTAGCATCATCGCCTCAGGAACAGCCACCATTCGTAGAACCCCTTCGTCCAAAACAAACGTGAGGCGCACCCCATCCACTGTGGGTCCCATTCCCATCCGGCCACCAATAGTCCCGGTAAAGACGCCAACTGTCCCAGACTCACCTGGATTCCTCAGCCCTCCTCCAGAGCACAATGGAAGCGAGGAAAGCTTGTATAATGACGACTCGATGGAAATACTAGAGTACAAAGCTTCTCCAAAGCGAATGAGTCTGCCAACATGGGGATCTGGGGGCGGAAGCGTCTACTCCCAACCGCCTGGAGCTGCGGGCTTCAGTTCAGAAGAAGACCAGATACTTGCTGCCAATCGCCATAGTCTGGTGGAGAAGATTGGAGAGCTGGTGGCTAATGCTCACGCTCTGGGCGAAGGCCAGTTTCCGTTCCCAGCAGATCCTCTGGCTGACCAGAGCCTCCAGCAGGATGAAGGGCATGAGAAGGGAGGAGAGGACATGCTGAAGACCATCCGCAGAGGGGTGCGTCTCAGGAAAGTGAGTTCCAATGACAGATCTGCACCAAGGATCATGCGATAG

Function

symbol description
mtss1la Predicted to enable actin binding activity. Predicted to act upstream of or within plasma membrane organization and ruffle assembly. Is expressed in brain and neural tube. Orthologous to human MTSS2 (MTSS I-BAR domain containing 2).

GO:

id name namespace
GO:0007009 plasma membrane organization biological_process
GO:0097178 ruffle assembly biological_process
GO:0003779 actin binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030219-89 Predicted to enable actin binding activity. Predicted to act upstream of or within plasma membrane organization and ruffle assembly. Is expressed in brain and neural tube. Orthologous to human MTSS2 (MTSS I-BAR domain containing 2).

Ensembl:

ensembl_id ENSDARG00000028943

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00026307 False 1211 mRNA 0.54 4 14772474 14777092
TCONS_00026308 False 2283 mRNA 0.53 16 14772474 14836600
TCONS_00026309 True 2386 mRNA 0.53 14 14772474 14836862

Neighbor

gene id symbol gene type direction distance location
XLOC_013300 NA coding downstream 6591 14763903 ~ 14765883 (-)
XLOC_013299 tshz3a coding downstream 28815 14731784 ~ 14743659 (-)
XLOC_013298 pdf coding downstream 80747 14688643 ~ 14691727 (-)
XLOC_013297 si:dkey-238o13.4 coding downstream 94538 14671789 ~ 14677936 (-)
XLOC_013296 hsbp1b coding downstream 435016 14334123 ~ 14337458 (-)
XLOC_013302 mapk12a coding upstream 7807 14844669 ~ 14860435 (-)
XLOC_013303 selenoo1 coding upstream 26545 14863407 ~ 14879135 (-)
XLOC_013304 trabd coding upstream 48683 14885545 ~ 14901480 (-)
XLOC_013305 panx2 coding upstream 69708 14906570 ~ 14922872 (-)
XLOC_013306 mlc1 coding upstream 91178 14928040 ~ 14941840 (-)
XLOC_013384 BX323829.1 misc upstream 4705240 19542102 ~ 19542231 (-)
XLOC_013294 BX950204.1 non-coding downstream 1228107 13544250 ~ 13544367 (-)
XLOC_013293 BX890576.1 non-coding downstream 1294252 13477102 ~ 13478222 (-)
XLOC_013291 BX511124.1 non-coding downstream 1484823 13281654 ~ 13287651 (-)
XLOC_013288 NA non-coding downstream 1658156 13077843 ~ 13114318 (-)
XLOC_013308 BX649610.1 non-coding upstream 199289 15036151 ~ 15036269 (-)
XLOC_013310 NA non-coding upstream 351155 15188017 ~ 15191812 (-)
XLOC_013319 BX928740.1 non-coding upstream 751225 15588087 ~ 15588201 (-)
XLOC_013321 CR854977.1 non-coding upstream 1038800 15875662 ~ 15875780 (-)
XLOC_013323 NA non-coding upstream 1102399 15939261 ~ 15970573 (-)

Expression


Co-expression Network