XLOC_013303 (selenoo1)


Basic Information

Item Value
gene id XLOC_013303
gene name selenoo1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007129.7
NCBI id CM002902.2
chromosome length 51023478
location 14863407 ~ 14879135 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00026311
GGTCGCAAGGAATAAAATGATCGAATAGTTCGTTCCTGTGTTTGTGTTTCCAGGGGGAACAATAACAACAACGGACCATATTTCCAAGAACATTTGAGAGCAACTTGCTTCAGTTAAAGTTACGTAATGATGACAGCAGCACTTCTTATCTAACAACCTTAATTTAGACACGAGTACGATGTGAATGGCTTCTGTTGGATCTCGTTTAACCCGGTTTTACATCTCACGCCCCGGTGTTATTGCGCGTAGATTTCTGGCACATGCGGGAATGGACGACATGGGCGTAAGCCTGAGCCGCTCTTCCCTTGAACGACTCGAGTTTGACAATGTTGCTCTTAAAAAACTTCCTCTGGACCCGTCCACCGAACCAGGTGTCCGGCAGGTCCGAGGTTCCTGCTTCTCCAGAGTCCAGCCGACCCCTCTGAAGAACCCGGAGTTTGTGGCGGTCTCTGCTCCAGCTCTTGCGCTTCTGGGTCTGGATGCCGAGGAGGTGTTGAAGGATCCGCTGGGCCCGGAGTATCTGAGCGGCTCTAAAGTGATGCCTGGGTCAGAGCCCGCTGCCCACTGCTACTGCGGACACCAGTTTGGACAATTTGCCGGACAGCTCGGAGATGGAGCTGCGTGTTATCTAGGAGAAGTGAAAGCACCGGCGGGTCAGAGCCCGGAGTTACTGCGGGAGAACCCGACTGGACGCTGGGAGATCCAGGTGAAGGGTGCTGGACTGACTCCGTACTCCAGacaggcCGATGGGCGTAAGGTCTTGCGCTCCAGCATTCGTGAGTTCCTGTGCAGTGAGGCGGTCTTTGCTTTAGGAGTGCCAACCACGAGAGCTGGATCAGTCGTGACGTCAGATTCTCGAGTCATGAGGGATATATTCTACGATGGCAACCCACGCATGGAAAGATGCTCTGTGGTCCTGCGCATTGCTCCCAGCTTCATTAGgTTTGGATCGTTCGAGATCTTCAAGCGAGCGGATGAGTTCACTGGCCGCCAGGGTCCCAGTTATGGCCACGATGAGCTGCGGACGCAGATGCTGGAGTACGTCATTGAGAACTTCTACCCTGAGATCCATCGCAATTATCCAGACCTCACTGAGAGAAACACTGCTTTCTTCAAAGAGgtgACTGTTCGAACAGCGAGGCTGGTGGCTCAGTGGCAGTGTGTGGGTTTCTGTCATGGAGTCCTCAATACTGATAACATGAGCATCCTGGGCCTGACTTTAGACTACGGGCCTTTTGGCTTCATGGACCGTTTTGATCCTGATTTCATCTGCAATGCCAGTGATAACTCAGGCCGCTATTCTTACCAGGCGCAGCCGGCCATCTGCCGCTGGAATTTAGCCCGTCTGGCTGAAGCACTGGAGCCTGATTTACCTCCAGATCGAGCTGAGCAGGTGCTGGACGAGTATCTGCCTCTCTATAATGATTTCTATCTGAGTAACATGAGGAAGAAACTGGGTTTATTGAGGAAGGAGGAACCAGAAGACGAGATGCTAATCACAGAGCTCATGCAGACCATGCACAACACGGGTGCCGACTTCACCAACACTTTCCGCAGCTTAAGTCAGATTTCCTGCCCGACTCAGGAGGAGGCTGAAGATGAAAGCGAGACTATAAAACAAGCCACAGAGCTGCTCCTGCACCAGTCTGCCTCTCTAGAGGAGCTGAAAGCTGCAAACAGACCCTCCATGGACCCACGTGAGCTTGCAATGCTGGTGTCCATGGCTCAGAGTAACCCTGCCCTGTTCCAGATGATTTCGGACAGGGGGACAGTCTCCCGGCAGCTGGAAAGACTCTCCAGACTGAAGGAGCTGATGGACACCACTGAAGAACAGCTGAGGGTCAAGCACACTGAACACTGGTCCGACTGGATCCAAAAATACAGGCAGCGACTTGCTCGTGAGTGTGAATCTGGGGTCGATGTGAAAGATGTACAGACGGAGAGAGTGCGTGTGATGAACAACAACAACCCGCACGTGGTGCTTAGAAACTACATCGCCCAGAATGCAATAGCAGCAGCTGAAAATGGAGACTTCTCAGAGGTCCAAAGAGTCCTGAAAGTGCTGGAAAAGCCTTTCTCAGTGCAGGAAGGTCTTGAACAGCCAGGTTGGATGGGAAGAGGAGGAGCAGCTATTCCTGGAGAAAGAGACGAGACTGAAGAAGAAGGGAGTAATAGTTCAGGAGCAGGGGCTCGAGGGCTTGTCCCTTATGACAGCAAACCCCCTGTCTGGGCCAATGAGATCTGTGTCACCTGATCATCATAAAACCTTCGTGACAACTAACCTGCTCATTAAAGCAGAATAATCCTGCAGAAGCTGGTTAGGCGTCAGCGGAGGTATTAAATGAGGTATTAAACTCCTGTCTACCAGTTCAAAAATGGGTAAGGTGTAAGTGAAATGTGACTGGTTTTTAATGATGACTTTGACCAGCAGTCTTTGCATGACAGGTCTCAGTCGGAAAGACAGAAGTTAAGCCTCTCTATGTATAAAATGACTTGGATTTGAATGTAGAAGGAGCTTTGAAAGGAAACGCACAAGCCATTGAGCAAGACAGCTTAAACGCACAAACTGGTGTAATTGTTTACTTGGAGAGCATCTTTTTCACACCAGATTAATTAGTTGCACTAATATGTAGCCCTGTTTTAACATACAATCCATTCGTAGCTGGAACAGTCCATTGTACAACAATTACTTTTAAATAGTAATGAActatttaacactttatttttaataattttctatataatcaataattttcttttttcccttttctgaAACCCCCTTTCAAAAACACGATAAACTGTGACAacattatttatatcatttttatGAACTTTCCGGATTAATATGTGCTATTTCTATTTCTATAATAAACGTAGCAAATTTCA
>TCONS_00026312
GAAGAAACTGGGTTTATTGAGGAAGGAGGAACCAGAAGACGAGATGCTAATCACAGAGCTCATGCAGACCATGCACAACACGGGTGCCGACTTCACCAACACTTTCCGCAGCTTAAGTCAGATTTCCTGCCCGACTCAGGAGGAGGCTGAAGATGAAAGCGAGACTATAAAACAAGCCACAGAGCTGCTCCTGCACCAGTCTGCCTCTCTAGAGGAGCTGAAAGCTGCAAACAGACCCTCCATGGACCCACGATGATTTCGGACAGGGGGACAGTCTCCCGGCAGCTGGAAAGACTCTCCAGACTGAAGGAGCTGATGGACACCACTGAAGAACAGCTGAGGGTCAAGCACACTGAACACTGGTCCGACTGGATCCAAAAATACAGGCAGCGACTTGCTCGTGAGTGTGAATCTGGGGTCGATGTGAAAGATGTACAGACGGAGAGAGTGCGTGTGATGAACAACAACAACCCGCACGTGGTGCTTAGAAACTACATCGCCCAGAATGCAATAGCAGCAGCTGAAAATGGAGACTTCTCAGAG

Function

symbol description
selenoo1 Predicted to enable ATP binding activity; metal ion binding activity; and protein adenylyltransferase activity. Predicted to be located in mitochondrion. Orthologous to human SELENOO (selenoprotein O).

GO:

id name namespace
GO:0005739 mitochondrion cellular_component
GO:0016740 transferase activity molecular_function
GO:0005524 ATP binding molecular_function
GO:0046872 metal ion binding molecular_function
GO:0016779 nucleotidyltransferase activity molecular_function
GO:0000166 nucleotide binding molecular_function
GO:0070733 protein adenylyltransferase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-4485 Predicted to enable ATP binding activity; metal ion binding activity; and protein adenylyltransferase activity. Predicted to be located in mitochondrion. Orthologous to human SELENOO (selenoprotein O).

Ensembl:

ensembl_id ENSDARG00000041951

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00026311 False 2886 mRNA 0.48 9 14863407 14879135
TCONS_00026312 True 543 processed_transcript 0.52 4 14866383 14871136

Neighbor

gene id symbol gene type direction distance location
XLOC_013302 mapk12a coding downstream 2972 14844669 ~ 14860435 (-)
XLOC_013301 mtss1la coding downstream 26545 14772474 ~ 14836862 (-)
XLOC_013300 NA coding downstream 97524 14763903 ~ 14765883 (-)
XLOC_013299 tshz3a coding downstream 119748 14731784 ~ 14743659 (-)
XLOC_013298 pdf coding downstream 171680 14688643 ~ 14691727 (-)
XLOC_013304 trabd coding upstream 6410 14885545 ~ 14901480 (-)
XLOC_013305 panx2 coding upstream 27435 14906570 ~ 14922872 (-)
XLOC_013306 mlc1 coding upstream 48905 14928040 ~ 14941840 (-)
XLOC_013307 btbd11b coding upstream 77030 14956165 ~ 15104858 (-)
XLOC_013308 BX649610.1 coding upstream 157016 15036151 ~ 15036269 (-)
XLOC_013384 BX323829.1 misc upstream 4662967 19542102 ~ 19542231 (-)
XLOC_013294 BX950204.1 non-coding downstream 1319040 13544250 ~ 13544367 (-)
XLOC_013293 BX890576.1 non-coding downstream 1385185 13477102 ~ 13478222 (-)
XLOC_013291 BX511124.1 non-coding downstream 1575756 13281654 ~ 13287651 (-)
XLOC_013288 NA non-coding downstream 1749089 13077843 ~ 13114318 (-)
XLOC_013310 NA non-coding upstream 308882 15188017 ~ 15191812 (-)
XLOC_013319 BX928740.1 non-coding upstream 708952 15588087 ~ 15588201 (-)
XLOC_013321 CR854977.1 non-coding upstream 996527 15875662 ~ 15875780 (-)
XLOC_013323 NA non-coding upstream 1060126 15939261 ~ 15970573 (-)

Expression


Co-expression Network