XLOC_013305 (panx2)


Basic Information

Item Value
gene id XLOC_013305
gene name panx2
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007129.7
NCBI id CM002902.2
chromosome length 51023478
location 14906570 ~ 14922872 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00026315
ACTGCAGATTAACCCTTCAGACGCCGGGGATGCTCAACACTAAAGCACAAGTCCCTGCATCCGCGTCcctttgtgtgtttgtggatcTGTTTGGTCGTGTTGTATGTTGTGAGGAGATTTTCCCTCTGATGTTGAAACACAACACCGGCTCTCTGCGATCCTTGGTGTAATCGAGTAATCTGACAGGCAGAGATATAGCCTGATGATCCAGTGATGGACAGCTCCTCGACTGAGGGGACAAACCCTCAGCCAATCCAGTGGCTGACGGGTTTGGGGGAGGAGGAGCTTGAAGTGTCATCAGGAGAGTTGTGAAGTTGGTGGCGAGCAGCAGGCTGCTGGGGCCCGAATGCAGAATATCCTCGAGCAGAACTTGGACATGGCCACGGCTCTGCTTGCGGGTGAGAAGCTGAAGGAGTTGATCATGCCAGGATCCACACAGGATGAGAAAGGCGGGGTACTCGCGGGTCTCATGGTGCAACTCAAACTAGAGCTGCCCTTTGACCGGGTCGTCACCATTGGGACTGTCATCATCCCCATACTGCTGGTCACATTAGTTTTCACGCGGAACTTTGCAGAGGAATCTATATATTGTTACACCCCACACAACTTTACACGAGACCAGGCCCTTTATGCCAGAGGCTACTGCTGGACAGAGCTGCGGGATGCAGTGCCTGGAGTCGACCCTGAACTTCGTCCGTCATTGTTCGAGCACAAGTTTCTACCCTATGCTCTGCTGGCCTTCGCAGGCATCATGTACATACCTGCTCTGGGATGGGAGTTCATGGCCTCCACTCGCCTCACCTCTGAGCTAAACTTTCTCCTTCAAGAGATCGACAACTGCTACCACAGGGCGGCAGAGGGCAGGGCGCCCAAGATCGAGAAGCAAATCCAATCCAAAGGGCCTGGAATTACCGAGCGCGAGCGACGGGAGATCATTGAAAATGCTGAGAAGGAGAAAAGTCCCGAGCAGAACCTGTTTGAGAAGTATCTTGAGCGCCGAGGGCAGAGTAACTTTCTTGCTAAGCTATACCTGGCGAGACATTTAGCCATTATCTGCCTCAGCTCAATACCTATAACATACCTGAGCGCCTACTATGCCCGTCAGAGGCAGAATGAGTTTACTTGTGCACTTGGCGGGCCGCCAGACACAAGTAGCATTCCTGAACTGAGGCTGAATGTGAACTGTAAGCTACCAGCCGTGCAACTCCAGCGCATCATGGCCGCGGTGGACATTGCTTTGCTGTGCACCATGAACCTCATTATCCTTTTGAACTTGCTGCATTTGTTTGTAGTGCGCAAGTCCAATTTTGTCTTTGACAAGCTACACAAAGTCGGCATTAAAACACGCCGGCGCTGGCAGAAGTCACCGTTTTGTGACATTAACATTCTGGCCATGTTCTGTAATGAGAATCGAGACCACATTAAGTCTCTCAACAGACTGGATTTTATCACCAACGAGAGCGACCTCATGTATGATAATGTGGTGCGGCAGCTGCTGGCAGCGTTGGCTCAATCAAACCACGATGCCACTCCAACCGTGAGAGACTCTGGTATCCAGACTATTGACCCTAGTATGGACCCTTCAGTGCTCGGTGTGGGAGAGCTGGGAGGAGAGCCCTCGGTAATCAAAAGACCTCGCAAAAAGATGAAGTGGATCCCCACATCTAACCCTTTGCCGCAGTCTTTTAAAGAACCCTTGACTCTAACAAGACTGGAAAATAGCATAAAGGCAGAGAAACCTAAACCAGTCCGAAGGAAGAATGTAGCAGATAGCATTATTGCTCCACTTCTGGACAGCAAGAGCACACAGTATCCTCCTACTAGCAAAGATACATATAATACACAAAAGAAGCACTCTCTTAACCTCTCGCTGGATGTTCATCCCTACATGCTGACTATCCAGAAAGCTGAAACAGTCAACCCTGAGCCTCCCCCCGTGGAGCACTCTATCAGTAGTGTGTATATTGAGGGCCCACATACAGTTGTCCATGTCTCATCTACTCTTACTGAAAAGAAAGAGTCTCCTCCACTGTCCACCACCACTGCCTTCTCCACAGCCACTCTCCCTACAAACTCATATTTGAATGGTGGGACGGCCAGCATGCCTCCTCCTCTAGACTCCCCAAAAGTCATAGGTCCTCTCAACCAGGAGACAGAGCCTGAGAGCCAGCCTGTGCCATTTAGTCGAAACCCCTCACTCCCGCTGCTGAGCATTCATCATACCTTATATGAAAAGGATGAGGACGATCAAAACAGAAGACTAGCCAGACCGGGCGAGCTGATTGCTGCTGGAGAGTGTTAAAGGAAAATGCAGAAACAGGcctgcatgcacacaaacacacaacaatgcAAAAGCACTTAGAGCATCAACTGAA
>TCONS_00026316
TTCTACCTCTGACAAGATCAGCCATCAACTCCGTTTGACCACAAATCTCTCTGAAGATCTCTTACATTTAGCCCATTATATTGCTGCAGGGACAAACCCTCAGCCAATCCAGTGGCTGACGGGTTTGGGGGAGGAGGAGCTTGAAGTGTCATCAGGAGAGTTGTGAAGTTGGTGGCGAGCAGCAGGCTGCTGGGGCCCGAATGCAGAATATCCTCGAGCAGAACTTGGACATGGCCACGGCTCTGCTTGCGGGTGAGAAGCTGAAGGAGTTGATCATGCCAGGATCCACACAGGATGAGAAAGGCGGGGTACTCGCGGGTCTCATGGTGCAACTCAAACTAGAGCTGCCCTTTGACCGGGTCGTCACCATTGGGACTGTCATCATCCCCATACTGCTGGTCACATTAGTTTTCACGCGGAACTTTGCAGAGGAATCTATATATTGTTACACCCCACACAACTTTACACGAGACCAGGCCCTTTATGCCAGAGGCTACTGCTGGACAGAGCTGCGGGATGCAGTGCCTGGAGTCGACCCTGAACTTCGTCCGTCATTGTTCGAGCACAAGTTTCTACCCTATGCTCTGCTGGCCTTCGCAGGCATCATGTACATACCTGCTCTGGGATGGGAGTTCATGGCCTCCACTCGCCTCACCTCTGAGCTAAACTTTCTCCTTCAAGAGATCGACAACTGCTACCACAGGGCGGCAGAGGGCAGGGCGCCCAAGATCGAGAAGCAAATCCAATCCAAAGGGCCTGGAATTACCGAGCGCGAGCGACGGGAGATCATTGAAAATGCTGAGAAGGAGAAAAGTCCCGAGCAGAACCTGTTTGAGAAGTATCTTGAGCGCCGAGGGCAGAGTAACTTTCTTGCTAAGCTATACCTGGCGAGACATTTAGCCATTATCTGCCTCAGCTCAATACCTATAACATACCTGAGCGCCTACTATGCCCGTCAGAGGCAGAATGAGTTTACTTGTGCACTTGGCGGGCCGCCAGACACAAGTAGCATTCCTGAACTGAGGCTGAATGTGAACTGTAAGCTACCAGCCGTGCAACTCCAGCGCATCATGGCCGCGGTGGACATTGCTTTGCTGTGCACCATGAACCTCATTATCCTTTTGAACTTGCTGCATTTGTTTGTAGTGCGCAAGTCCAATTTTGTCTTTGACAAGCTACACAAAGTCGGCATTAAAACACGCCGGCGCTGGCAGAAGTCACCGTTTTGTGACATTAACATTCTGGCCATGTTCTGTAATGAGAATCGAGACCACATTAAGTCTCTCAACAGACTGGATTTTATCACCAACGAGAGCGACCTCATGTATGATAATGTGGTGCGGCAGCTGCTGGCAGCGTTGGCTCAATCAAACCACGATGCCACTCCAACCGTGAGAGACTCTGGTATCCAGACTATTGACCCTAGTATGGACCCTTCAGTGCTCGGTGTGGGAGAGCTGGGAGGAGAGCCCTCGGTAATCAAAAGACCTCGCAAAAAGATGAAGTGGATCCCCACATCTAACCCTTTGCCGCAGTCTTTTAAAGAACCCTTGACTCTAACAAGACTGGAAAATAGCATAAAGGCAGAGAAACCTAAACCAGTCCGAAGGAAGAATGTAGCAGATAGCATTATTGCTCCACTTCTGGACAGCAAGAGCACACAGTATCCTCCTACTAGCAAAGATACATATAATACACAAAAGAAGCACTCTCTTAACCTCTCGCTGGATGTTCATCCCTACATGCTGACTATCCAGAAAGCTGAAACAGTCAACCCTGAGCCTCCCCCCGTGGAGCACTCTATCAGTAGTGTGTATATTGAGGGCCCACATACAGTTGTCCATGTCTCATCTACTCTTACTGGTACAGTATGCTTGGATTGCCTTCGGGGATAcaaaatttatcaaaatttatgttgttttgtttttattttatcaatataaGACATATTATAGAGTGGGTGCAGTGATCACACATTCCCTACAGGCACAGGACACCAAAATGATGCCATATTAACCTTGTACCTCAACGTCGtagggatgttggattttgtttggagatgaaaatcaggttgacgtcaaaaTTCAAGGTCAAACCAACGTCGATGTCTAACGTCCAACCtcaaatcaacctaaaatcaaccaaatatcaacatctaattatgttacaccttgacattgtgtggacgttaccactataacatctatcagatgttggattttggtcactttccaacacaacctaaaatcaatcaaatatcaatgtaatttgatgtcaatattggacgtcaaaataacgttgtccttagacgtaggcaggacattgaattttggtcacctggcGTCATGACCTAGATCTAacttaatattaatgtcttatgatgatgtgtgcctgctgggtactgTAGGCAGGCCAATAAGTTGGGTTTTCTTAACAAAATGCCAGTAGGATTTTTCAATTGGCTTTTGAATTATTGCTAAAAATCAAGGTGATCACAAATTAACATAATACTTATgaatttttaacacaaaatatgGTAGAttctagaacaggggtcaccaatcttttTGAAACTgggagctacttcttgggtaccgattaaagtgaagggctaccagtttgatacacac
>TCONS_00026317
ATGGCCACGGCTCTGCTTGCGGGTGAGAAGCTGAAGGAGTTGATCATGCCAGGATCCACACAGGATGAGAAAGGCGGGGTACTCGCGGGTCTCATGGTGCAACTCAAACTAGAGCTGCCCTTTGACCGGGTCGTCACCATTGGGACTGTCATCATCCCCATACTGCTGGTCACATTAGTTTTCACGCGGAACTTTGCAGAGGAATCTATATATTGTTACACCCCACACAACTTTACACGAGACCAGGCCCTTTATGCCAGAGGCTACTGCTGGACAGAGCTGCGGGATGCAGTGCCTGGAGTCGACCCTGAACTTCGTCCGTCATTGTTCGAGCACAAGTTTCTACCCTATGCTCTGCTGGCCTTCGCAGGCATCATGTACATACCTGCTCTGGGATGGGAGTTCATGGCCTCCACTCGCCTCACCTCTGAGCTAAACTTTCTCCTTCAAGAGATCGACAACTGCTACCACAGGGCGGCAGAGGGCAGGGCGCCCAAGATCGAGAAGCAAATCCAATCCAAAGGGCCTGGAATTACCGAGCGCGAGCGACGGGAGATCATTGAAAATGCTGAGAAGGAGAAAAGTCCCGAGCAGAACCTGTTTGAGAAGTATCTTGAGCGCCGAGGGCAGAGTAACTTTCTTGCTAAGCTATACCTGGCGAGACATTTAGCCATTATCTGCCTCAGCTCAATACCTATAACATACCTGAGCGCCTACTATGCCCGTCAGAGGCAGAATGAGTTTACTTGTGCACTTGGCGGGCCGCCAGACACAAGTAGCATTCCTGAACTGAGGCTGAATGTGAACTGTAAGCTACCAGCCGTGCAACTCCAGCGCATCATGGCCGCGGTGGACATTGCTTTGCTGTGCACCATGAACCTCATTATCCTTTTGAACTTGCTGCATTTGTTTGTAGTGCGCAAGTCCAATTTTGTCTTTGACAAGCTACACAAAGTCGGCATTAAAACACGCCGGCGCTGGCAGAAGTCACCGTTTTGTGACATTAACATTCTGGCCATGTTCTGTAATGAGAATCGAGACCACATTAAGTCTCTCAACAGACTGGATTTTATCACCAACGAGAGCGACCTCATGTATGATAATGTGGTGCGGCAGCTGCTGGCAGCGTTGGCTCAATCAAACCACGATGCCACTCCAACCGTGAGAGACTCTGGTATCCAGACTATTGACCCTAGTATGGACCCTTCAGTGCTCGGTGTGGGAGAGCTGGGAGGAGAGCCCTCGGTAATCAAAAGACCTCGCAAAAAGATGAAGTGGATCCCCACATCTAACCCTTTGCCGCAGTCTTTTAAAGAACCCTTGACTCTAACAAGACTGGAAAATAGCATAAAGGCAGAGAAACCTAAACCAGTCCGAAGGAAGAATGTAGCAGATAGCATTATTGCTCCACTTCTGG

Function

symbol description
panx2 Predicted to enable wide pore channel activity. Predicted to be involved in cation transport and cell-cell signaling. Predicted to act upstream of or within ion transport and positive regulation of interleukin-1 production. Located in cytoplasmic vesicle. Is expressed in brain; eye; heart; retina; and spinal cord. Orthologous to human PANX2 (pannexin 2).

GO:

id name namespace
GO:0007267 cell-cell signaling biological_process
GO:0006811 ion transport biological_process
GO:0006812 cation transport biological_process
GO:0005886 plasma membrane cellular_component
GO:0005921 gap junction cellular_component
GO:0031410 cytoplasmic vesicle cellular_component
GO:0030054 cell junction cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0022829 wide pore channel activity molecular_function
GO:0015267 channel activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-050419-55 Predicted to enable wide pore channel activity. Predicted to be involved in cation transport and cell-cell signaling. Predicted to act upstream of or within ion transport and positive regulation of interleukin-1 production. Located in cytoplasmic vesicle. Is expressed in brain; eye; heart; retina; and spinal cord. Orthologous to human PANX2 (pannexin 2).

Ensembl:

ensembl_id ENSDARG00000063019

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00026315 False 2375 mRNA 0.50 7 14906570 14922872
TCONS_00026316 False 2630 mRNA 0.46 4 14908964 14917296
TCONS_00026317 True 1417 mRNA 0.51 3 14910079 14917066

Neighbor

gene id symbol gene type direction distance location
XLOC_013304 trabd coding downstream 5090 14885545 ~ 14901480 (-)
XLOC_013303 selenoo1 coding downstream 27435 14863407 ~ 14879135 (-)
XLOC_013302 mapk12a coding downstream 46135 14844669 ~ 14860435 (-)
XLOC_013301 mtss1la coding downstream 69708 14772474 ~ 14836862 (-)
XLOC_013300 NA coding downstream 140687 14763903 ~ 14765883 (-)
XLOC_013306 mlc1 coding upstream 5168 14928040 ~ 14941840 (-)
XLOC_013307 btbd11b coding upstream 33293 14956165 ~ 15104858 (-)
XLOC_013308 BX649610.1 coding upstream 113279 15036151 ~ 15036269 (-)
XLOC_013309 mterf2 coding upstream 225059 15147931 ~ 15155962 (-)
XLOC_013310 NA coding upstream 265145 15188017 ~ 15191812 (-)
XLOC_013384 BX323829.1 misc upstream 4619230 19542102 ~ 19542231 (-)
XLOC_013294 BX950204.1 non-coding downstream 1362203 13544250 ~ 13544367 (-)
XLOC_013293 BX890576.1 non-coding downstream 1428348 13477102 ~ 13478222 (-)
XLOC_013291 BX511124.1 non-coding downstream 1618919 13281654 ~ 13287651 (-)
XLOC_013288 NA non-coding downstream 1792252 13077843 ~ 13114318 (-)
XLOC_013319 BX928740.1 non-coding upstream 665215 15588087 ~ 15588201 (-)
XLOC_013321 CR854977.1 non-coding upstream 952790 15875662 ~ 15875780 (-)
XLOC_013323 NA non-coding upstream 1016389 15939261 ~ 15970573 (-)

Expression


Co-expression Network