XLOC_013312 (ric8b)


Basic Information

Item Value
gene id XLOC_013312
gene name ric8b
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007129.7
NCBI id CM002902.2
chromosome length 51023478
location 15287065 ~ 15329471 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00026325
AACTCATACTCACTGTTGTTGTGTGCAGAAGGACTGACAGTGTTTCTAAGTGGACGGCAAAAGCATCATTCAGAGATGAGTTTGAGTGATATTCTGTCAGAGATCGACGGTGGAGATGACAAGAAGGTTGAAAAACTTTTGCTGAAGTATAACACTGAGAACAGTCGCACGTTTGCCTTCGACCTCGAGGAGGAGGGTGCACGAATTAAATTATGTCAGGGTCTTCTTACAGTCCTCCGTCGGTCAGATCTTCCACTTTGCCAAAGCACCTGCCTGGAGACCCTGCGCATCTTGTCCAGAGACAAGCATGTGCTTGGACCCGTAGCCACCAAAGAAGGAATGCTTACTTTAGCAGGACTTGCCCGGATCTGTGTGGCGGGCCATGAAGGCGAGCCATTAGAGGAGGCGCAGTCAGCAGAAGAGGAGAGGGTTGTGGTGGAGGCCCTTAAGTGCCTGTGCAACGTAGTGTTCAATAGCGTGCCGGCACAGCAGATGGGAGGTGACTTGCAGTTAGCGGAAGGCCTATGCCCCCGCTTGCATTTGGTCAGCGCGTCACATCATGAAGTGGGCTTATTTTCCCTCCGGCTGCTGTTTTTGCTTTCGGCTCTGCGGACGGATGTGCGCTCCACGCTTCAGAAGGAGGCAGGCGCGGTGAAACTACTCACTAATGTGTTGGAACGCACTCTTGATGTGCGTTGGGTTGGGCCATATGAGGCTGCACCTCCTGATCCAGAAGCTCCACCCATTCCACCAGAAAACAACGAGCTTACCATGGAAGCCCTCAAAGCCCTGTTCAACCTCACCATGTCTGATTCCTGTGATAAGGACAGTCTCCACAAACTTCGGCTGATTGCAGGCATCATGAGACACCTCCtaatgctgaaaacacacactgaAGAAAAAACTGAGGAGACTCACAGAtaggtacaacatcaatctgaagtcatgttgacatcctgcaCCTGCTGGGAAACatcatgaatttaaaatatttcttcaATAACGACAACAACTTAAACCAACCTTTAAAGAAGTGCCCATGATTATGAGAAGATCTGCTTTTGGGAAATCTTCAGCATGTTGGAAGTATTTTTCCGGCAGATCTTCTCCAAAGAACACAACATTAGGTTTGACGGCCCCAGCGCAGAATGTGCAGATGGGAACACTCCCGTTCATTATAGCTTGCTGAGAGAAAAACACAAAAGCAGTTTATGTGTAGTGCGTAGAATGGTGCAAACTCAATACCATCTATTTTAGCTCTATTTACCTTGGCTTCCTCTGCAGGATAAGGAGTATAGCAGAGGTGACAGGCAGCGGTGGCAAAACTCCCATGAGCCTCCACAAGTTTGTCATCAGGGATACCGCAAACTACAGACAGGGTTAAAGAGAGAGTTCACACAAATACTATTGACtaatgaataaaacacagcaaatCAGTAAAGACGTTTAAGGTTAGACATTCCAGGCAAAAatgttgagattttttttttactttttccttaaatgctttttCAGTCTAATGGAaggaataaataataacaataaataaatagctaaattttATTGTGATTATGCCATATTTGAGGGCAAAGGtgccccctggtggttcggcagacgaataaacaggaaaatatttaaataggaTAACAGCCGCACGGAATAGTAAAATCACGGGAGAATGCCaggttt
>TCONS_00026326
CAGGAGGTGTGTAGTGAAACTCATACTCACTGTTGTTGTGTGCAGAAGGACTGACAGTGTTTCTAAGTGGACGGCAAAAGCATCATTCAGAGATGAGTTTGAGTGATATTCTGTCAGAGATCGACGGTGGAGATGACAAGAAGGTTGAAAAACTTTTGCTGAAGTATAACACTGAGAACAGTCGCACGTTTGCCTTCGACCTCGAGGAGGAGGGTGCACGAATTAAATTATGTCAGGGTCTTCTTACAGTCCTCCGTCGGTCAGATCTTCCACTTTGCCAAAGCACCTGCCTGGAGACCCTGCGCATCTTGTCCAGAGACAAGCATGTGCTTGGACCCGTAGCCACCAAAGAAGGAATGCTTACTTTAGCAGGACTTGCCCGGATCTGTGTGGCGGGCCATGAAGGCGAGCCATTAGAGGAGGCGCAGTCAGCAGAAGAGGAGAGGGTTGTGGTGGAGGCCCTTAAGTGCCTGTGCAACGTAGTGTTCAATAGCGTGCCGGCACAGCAGATGGGAGGTGACTTGCAGTTAGCGGAAGGCCTATGCCCCCGCTTGCATTTGGTCAGCGCGTCACATCATGAAGTGGGCTTATTTTCCCTCCGGCTGCTGTTTTTGCTTTCGGCTCTGCGGACGGATGTGCGCTCCACGCTTCAGAAGGAGGCAGGCGCGGTGAAACTACTCACTAATGTGTTGGAACGCACTCTTGATGTGCGTTGGGTTGGGCCATATGAGGCTGCACCTCCTGATCCAGAAGCTCCACCCATTCCACCAGAAAACAACGAGCTTACCATGGAAGCCCTCAAAGCCCTGTTCAACCTCACCATGTCTGATTCCTGTGATAAGGACAGTCTCCACAAACTTCGGCTGATTGCAGGCATCATGAGACACCTCCtaatgctgaaaacacacactgaAGAAAAAACTGAGGAGACTCACAGTCATGCAATAAATCTCTTGAGTAACCTTCCCGTTCAGTGCCTGGATGTCCTGATAGACGTCCCTGTCCAAGGTGGCCTGGAAAAATACAGAGGGAAAAACATGGACACGGTGCAGATTCTGCTAGATTTTATGATAAAGAGGATAGACAAGGGGTTCAACTTTAAAGAAGGCTTGACACCTGTGCTGAGTCTGTTGACGGAGAGCGCTAGATACCACAGGGAGATCCGCAGATACATCAAGGCCCAGATCTTACCTCCTCTGAAGGATGTGAAGGAAAGGCCAGAAATTGGAGACACCATTCGAAACAAACTGGTGCGTCTTATGACGCATGTAGACATGGCAGTGAAACAGGGGGCTGCTGAGTTCCTGTTTGTGCTCTGCAAGGAGAGTGTGGATAATCTGCTGAAGTACACTGGATATGGCAATGCTGCTGGGCTGTTGATGGCACGAGGGCTGCTGGCCGGAGGTAGAGGAGAGACGCAGTACTCATCTGATGAAGACTCTGACACTGAGGAGTACAAGTCCGTCAAACCATTCATTAACCCCATTACAGGTCACGTAGAGGATCCATTGCCAAATCCTCTAGACGAGATGACGGAGGAGCAGAAGGAGTATGAAGCCCAGAGGCTTGTCAGTATGATTGACGAATTATCAAGGAAGGAGCTGATCAGACCAATGGGAGTGAGGAAAGACGGGACTCTGGCACCTTTAGGACAGGCCATCCACGACTGCAGTCTAGCCAGCAGCGGCTCCGACTCCGACtagcacatcacacacacacacacacacacacactgaccagtGCTCGTCTTTCTCACTGAGATGCGAAGAATGAGCTGCCGTCCAGCAAACGCACGAGTTTCAGCAGATAGAAATGAGGAAGATGATGCTCAACGTGTGTT
>TCONS_00026327
CTTGATGCAGCAATTTTCGATTTTGATTCTCTTTAATGTGATCTGACTAAGCAGTGGCCATCAACTACTATTTATAGAATTTTCTTTATTCAAAGGAACGAGCGTATTTATGCGACTCTTCATTTTCTTTTGCACTTTAATTATTGAGTTAAAGAGTCTTTAGTTGCTGATTAAAAGTGTACTCTTTGTACAGATCTTACCTCCTCTGAAGGATGTGAAGGAAAGGCCAGAAATTGGAGACACCATTCGAAACAAACTGGTGCGTCTTATGACGCATGTAGACATGGCAGTGAAACAGGGGGCTGCTGAGTTCCTGTTTGTGCTCTGCAAGGAGAGTGTGGATAATCTGCTGAAGTACACTGGATATGGCAATGCTGCTGGGCTGTTGATGGCACGAGGGCTGCTGGCCGGAGGTAGAGGAGAGACGCAGTACTCATCTGATGAAGACTCTGACACTGAGGAGTACAAGTCCGTCAAACCATTCATTAACCCCATTACAGGTCACGTAGAGGATCCATTGCCAAATCCTCTAGACGAGATGACGGAGGAGCAGAAGGAGTATGAAGCCCAGAGGCTTGTCAGTATGATTGACGAATTATCAAGGAAGGAGCTGATCAGACCAATGGGAGTGAGGAAAGACGGGACTCTGGCACCTTTAGGACAGGCCATCCACGACTGCAGTCTAGCCAGCAGCGGCTCCGACTCCGACtagcacatcacacacacacacac
>TCONS_00026328
GGCAGGCGCGGTGAAACTACTCACTAATGTGTTGGAACGCACTCTTGATGTGCGTTGGGTTGGGCCATATGAGGCTGCACCTCCTGATCCAGAAGCTCCACCCATTCCACCAGAAAACAACGAGCTTACCATGGAAGCCCTCAAAGCCCTGTTCAACCTCACCATGTCTGATTCCTGTGATAAGGACAGTCTCCACAAACTTCGGCTGATTGCAGGCATCATGAGACACCTCCtaatgctgaaaacacacactgaAGAAAAAACTGAGGAGACTCACAGGTACTtccaaactagggctgcacgttattggaaaaatctgatattgccatccccccccccccccccccaaaagatggtttgaatagcactatttgatgtTCTCTGGGGGGCTAACAGTATTCAGTATTGAATAAT

Function

symbol description
ric8b Predicted to enable G-protein alpha-subunit binding activity and guanyl-nucleotide exchange factor activity. Acts upstream of or within pigment cell development. Predicted to be active in cytoplasm and plasma membrane. Orthologous to human RIC8B (RIC8 guanine nucleotide exchange factor B).

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0070285 pigment cell development biological_process
GO:0005886 plasma membrane cellular_component
GO:0005737 cytoplasm cellular_component
GO:0005085 guanyl-nucleotide exchange factor activity molecular_function
GO:0005096 GTPase activator activity molecular_function
GO:0001965 G-protein alpha-subunit binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-6435 Predicted to enable G-protein alpha-subunit binding activity and guanyl-nucleotide exchange factor activity. Acts upstream of or within pigment cell development. Predicted to be active in cytoplasm and plasma membrane. Orthologous to human RIC8B (RIC8 guanine nucleotide exchange factor B).

Ensembl:

ensembl_id ENSDARG00000005972

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00026325 False 1689 mRNA 0.46 5 15287065 15329454
TCONS_00026326 False 1840 mRNA 0.51 10 15295919 15329471
TCONS_00026327 False 732 lncRNA 0.46 4 15296036 15311911
TCONS_00026328 True 414 lncRNA 0.49 2 15318386 15320930

Neighbor

gene id symbol gene type direction distance location
XLOC_013311 tmem263 coding downstream 17793 15259388 ~ 15269272 (-)
XLOC_013310 NA coding downstream 95253 15188017 ~ 15191812 (-)
XLOC_013309 mterf2 coding downstream 131103 15147931 ~ 15155962 (-)
XLOC_013307 btbd11b coding downstream 182207 14956165 ~ 15104858 (-)
XLOC_013308 BX649610.1 coding downstream 250796 15036151 ~ 15036269 (-)
XLOC_013313 rfx4 coding upstream 4646 15334117 ~ 15373620 (-)
XLOC_013314 polr3b coding upstream 52558 15382029 ~ 15420168 (-)
XLOC_013315 endouc coding upstream 129847 15459318 ~ 15467446 (-)
XLOC_013316 ppfibp1b coding upstream 139544 15469015 ~ 15551456 (-)
XLOC_013317 si:ch211-245j22.3 coding upstream 224910 15554381 ~ 15559817 (-)
XLOC_013384 BX323829.1 misc upstream 4212631 19542102 ~ 19542231 (-)
XLOC_013300 NA non-coding downstream 521182 14763903 ~ 14765883 (-)
XLOC_013294 BX950204.1 non-coding downstream 1742698 13544250 ~ 13544367 (-)
XLOC_013293 BX890576.1 non-coding downstream 1808843 13477102 ~ 13478222 (-)
XLOC_013319 BX928740.1 non-coding upstream 258616 15588087 ~ 15588201 (-)
XLOC_013321 CR854977.1 non-coding upstream 546191 15875662 ~ 15875780 (-)
XLOC_013323 NA non-coding upstream 609790 15939261 ~ 15970573 (-)
XLOC_013324 NA non-coding upstream 661983 15991454 ~ 16018087 (-)
XLOC_013327 NA non-coding upstream 895319 16224790 ~ 16307937 (-)

Expression


Co-expression Network