XLOC_013315 (endouc)


Basic Information

Item Value
gene id XLOC_013315
gene name endouc
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007129.7
NCBI id CM002902.2
chromosome length 51023478
location 15459318 ~ 15467446 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00026332
TTTGAAGTGCTTTTCCCGTCTATCCCTCAGTCTTTTCTACTGCTGTGGCAGAGATGGATTGACTCGGTGAATGTATTTGAGTGTATTCAGGCATGAGAGCTTCACCAGGGGCCACTTCACTGTGTGAGTTTTAGTGTAAGACCTTAAACAAAAGAGGAAAAACCATACAAATACTTCGCGTTCATCTGTGCACGCGCATTATACCAACCACCATGGCCAGTGGATATGATTTTGGATGGATCCCTGTGCTGTTGTCACTGTTTACGCTCACTGATGCATCAAGTCAAACTGTGAACCAGGAGCTTTCGAATATTTTTAATGAGCTCTGGAAGCTGGATGTAAATCGCATGGAGCCTCTGACTAATTACAACATCTCACTACAgGGCAAAGCTGGTTACATACCACAGGGAAGCACAAATGTGGTAGACCATGCCTCATCACCACTGTTTGTTAATGTCGATGAGGCCAAACTGAGCTCCATTACCACTTATGCACGTTTTATGAAGCTTTTGGACAACTATGAGAGGTCCACTGGTGTGGCAGAGAGAGTGACCGCTGAAGAAGTGACCGAAAATAACTCCTTTCTGGATGCTATCTTAGAAACAGCAGTCATGAAGCGAGCCCACCAGTACCTGATTGGAAAGGGAAAATCCCGCTCGGATCTGAGACAGTTTAAGAGTCAGCTGTACTACATGTGGTTCCGCCTGTATCATAGAGAGAGAAACGGAGGGGAGGACTCCAGTGGATTCGAGCATGTGTTTGTCGGTGAAACCAAGTTTGGCAGAGAAATCATGGGGCTTCACAACTGGGTCCAGTTTTACCTGCAGGAGAAACAGAATCTCCTTGATTACAAGGGCTACAAAGCCAGAGCCAATGATGTGCCTGATGCGGATGACCATGTGTTGAATGTGCAGTTCAGCTGGCACGGTTTGGTCAAGCCAGTGGCGAGTGCATTTGTGGGTGTGAGCCCTGAGTTTGAAATGGCCGTTTTTACCATCCTGTTCCTGACGTCCACTGAGAAGACCACCACCGCCGTAGTCAATCTGGACGAGTACCAGCTGGAGATGGTGGTGCACAGACATGGTCGCTGTATTGGGACGGCCTACCCTAAACTGCTGAGCAGCAACAACAGACACATGTAGACCACACATACTGTAGCTGTTCACAAGTTATAAAGGCATATCTTAGTTTTTAATACagagacatttacatttagtcttttAGCTGACACTTTGGTCCAGAGCCACTTTGAACATTTGTTTTGTATTGCAGATGTCTTCATTTTAGATGCTTGTTTACTTTGCGAGATACATTTTGCTAATTTGGTCAACTTCAGAATGCTTTTACAGTTAAAAGCAGTAAGTTTTAAATACTAGCATGCTTATAGTGTTTAATTAGAATTGACTTTGATatggtcattttttttaaatgtattcacgTATTTTGATTCTGACTGTTGTTTTTTGCATAATTGGTTATGGAAAAAAAAGCACATAACCGTttacatacttttattttttacagaatcAATAAATCAAGAATTACTCAATAAAA

Function

symbol description
endouc Predicted to enable RNA binding activity and endoribonuclease activity. Predicted to be located in extracellular region. Is expressed in fin bud; nervous system; and pharynx.

GO:

id name namespace
GO:0005576 extracellular region cellular_component
GO:0004518 nuclease activity molecular_function
GO:0004519 endonuclease activity molecular_function
GO:0004521 endoribonuclease activity molecular_function
GO:0046872 metal ion binding molecular_function
GO:0016787 hydrolase activity molecular_function
GO:0003723 RNA binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-060503-141 Predicted to enable RNA binding activity and endoribonuclease activity. Predicted to be located in extracellular region. Is expressed in fin bud; nervous system; and pharynx.

Ensembl:

ensembl_id ENSDARG00000112234

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00026332 True 1554 mRNA 0.43 8 15459318 15467446

Neighbor

gene id symbol gene type direction distance location
XLOC_013314 polr3b coding downstream 39150 15382029 ~ 15420168 (-)
XLOC_013313 rfx4 coding downstream 85698 15334117 ~ 15373620 (-)
XLOC_013312 ric8b coding downstream 129847 15287065 ~ 15329471 (-)
XLOC_013311 tmem263 coding downstream 190046 15259388 ~ 15269272 (-)
XLOC_013310 NA coding downstream 267506 15188017 ~ 15191812 (-)
XLOC_013316 ppfibp1b coding upstream 1569 15469015 ~ 15551456 (-)
XLOC_013317 si:ch211-245j22.3 coding upstream 86935 15554381 ~ 15559817 (-)
XLOC_013318 arntl2 coding upstream 102181 15569627 ~ 15610856 (-)
XLOC_013319 BX928740.1 coding upstream 120641 15588087 ~ 15588201 (-)
XLOC_013320 si:ch211-219a15.3 coding upstream 303015 15770461 ~ 15771554 (-)
XLOC_013384 BX323829.1 misc upstream 4074656 19542102 ~ 19542231 (-)
XLOC_013308 BX649610.1 non-coding downstream 423049 15036151 ~ 15036269 (-)
XLOC_013300 NA non-coding downstream 693435 14763903 ~ 14765883 (-)
XLOC_013294 BX950204.1 non-coding downstream 1914951 13544250 ~ 13544367 (-)
XLOC_013293 BX890576.1 non-coding downstream 1981096 13477102 ~ 13478222 (-)
XLOC_013321 CR854977.1 non-coding upstream 408216 15875662 ~ 15875780 (-)
XLOC_013323 NA non-coding upstream 471815 15939261 ~ 15970573 (-)
XLOC_013324 NA non-coding upstream 524008 15991454 ~ 16018087 (-)
XLOC_013327 NA non-coding upstream 757344 16224790 ~ 16307937 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000013_06761450_06763720 NA coding CI01000013 null 6761037 ~ 6764263 (+)
bowfin (Amia calva) AMCG00012722 NA coding CM030125.1 CM030125.1 5640001 ~ 5646627 (+)