XLOC_013316 (ppfibp1b)


Basic Information

Item Value
gene id XLOC_013316
gene name ppfibp1b
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007129.7
NCBI id CM002902.2
chromosome length 51023478
location 15469015 ~ 15551456 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00026333
CCCACTTTCATTGTCGACATGGCGCTGGCGAGGTGGGAACACCAACTACGGAAAGAGCAAACCTCGTAAAGAGATTGAAagtttacggatttatttttccATACTTTTGACGGCGGTCCAGATTTGGATTAACAGAGCTCAACAAGATGATGTCTGATGCCAGTGACATGTTGGCAGCTGCCTTGGAGCAAATGGATGGTATCATAGCAGGCTCCAAGGCTCTGGACTATTCCAACGGCATCTTTGACTGTCAGTCCCCGACATCGCCCTTCATGGGAAGCCTGCGAGCGCTAAACTTACTAGAGGACCTGAGGGGCATACTGGAGCTCATGGAGactgaagagagagagagcttgcGTTGCCAGATCCCAGACTCCACCGCAGACAGTTTGGTGGAGTGGCTGCATGGTCACCTGTCAAATGGACACATTTCCATCTCTGGTGATGTTTACCAGGACAGACTTAATCGTCTTGAAAGTGATAAAGAATCCCTTGTGCTTCAGGTGAGTGTTTTGACGGATCAAGTGGATGCGCAGGGAGAAAAAATAAGGGACCTAGACCTGTGCCTTGATGAACACCGTGAAAAACTAAACGCCACTGAAGAAATGTTACAGCAGGAGCTCCTGTGCAGGTCAGCATTGGAGACACAAAAGCTAGAGCTGATGACAGAAGTGTCCAATTTGAAACTGAAGTTAGCAGCAATGGATAAAGAGAGACTTGATTTTGATGAGAGATTCGGAGATGAGggtttgATTTTGGAGATCAATGAACTGAGATATCGCATTTCTGAGATGGAGAATGAGCGGTTACAGTATGAAAAGAAACTGAAATCCACTAAGTCGCTAATGGCCAAACTTTCTAGCCTGAAACTGAAAATGGGCCAGATGCAGTATGAGAAACAGAGGAAGGAACAAAAAATCGAGGCACTCAAGGAGGAGCTGGTTTCACTGAGGAGGCAGCAGGAGGGCAGAGATGGTGTGGATCTGCGGAGGCTGCAGGATGAGAGCGGCTCCAGATCCTCAACGCCCGCAGGCCTCGACGGCACAGAGAGAGTTTATGTGATGTTAAATGTCAGTCTGAGAGTTAATGTTTTGACATTTAGTGTTTCTGAAATGGACTTCAGCTTACTGAGCCTGTGCTTTGCAGATATGGAAGTACAGAAGATGAAGAAGGCAATGGAGTCGCTGATGGCGGCAAATGAGGAGAAGGATCGCAAGATTGAGGAGTTGCGGCAGTCACTAATGCGTTACAAGAAAGTGCAAGAGATGGTCATGTCAGCCCATGGGAGAAAAGAAAAGGTCAAAGAAGGAGACAGTGATGAGAGTAACAGCGACAGCTCCCTCTCCATGTCCACCGCTCTCTCCTTCTCCATTGACACCGACAAATCTCTGCTCGCGTACACAGAGGAAGCTGCCAGAGCTCAAAATGAGGCCTCAACATTCGTCAGTACACTCCAAGTGCCATCGCTCACAGTGTCATCACCAGACAAAGCAGACAGCGACTCAGTCCTGGAACACATGCAGTCAAGTGATAAAGAGTGCGAGGAGCCAGATCAGTCACAGGAGACCCCATTACATGAGAGTCCCGAGAGTTCAGAAGTCACAAAATCAGGGAGCCAAGGGAACCTCGATGGGGGAACCAGTGAAAAGAGCAAAAAATTTGATGAGTTCAACAAGATCACTACTTTACCACCCAAATCGACAAGCTCTTCTGGTACTGCTGAGGATGACAGTTTTGGCACCAGGAAAATGAGATCATCATTTGGACGGGGCTTTTTCAAGCTCAAGGGTGGCAAGAGGACTGCCAGCGCCCCAAATTTATCTGAGACGGAGAGGGACGGCACTGACCATCTGGATCTGGCAGGCCTGCCACAGAGGTCAGCTGACAGCGACAGCACACACACTCTCCCCATTTCACCAGAGGGCAAGAAGAAGTCCAAAGGATTTAAAGCACTCTTTGGAAAGCTCAAAAGAAGTCAGTCGACCACATTCAACCTGGATGATAACCTGTCAGAAAGTGAGTTTAAGCGTGGTGGAGTCAGAGCCACTGCTGGACCCAGACTGggatggtcacgtgacctgcaGAACACCAACAGTGATCTTGATGCCCCATTTGCACGATGGTCCCGGGAGCAGGTGTGTGACTGGATGCAGGAGCAGGGATTGGGACTGTATGTGACTTTGGCGAGGCAGTGGGTCTCTTCCGGGCAGACGCTTCTGCAGGCGTCCCAACATGACTTGGAAAGAGAGCTGGGAATAAAACACCCGCTACACAGGAAGAAACTCCAGCTGGCCCTGCAGGCTCTGGGCTCAGAGGAAGACGACAACAAGGGCAAACTAGACTACCACTGGGTTACAAGGTGGCTTGATGACATCGGCCTCCCGCAGTACAAGACTCAGTTTGACGAGGGACGAGTGGATGGACGGATGCTTCACTATATGACTGTGGATGACCTGTTATCTCTGAAAGTGGGCAGCGTTCTTCATCACCTTAGTATTAAAAGAGCCATCCAGGTGCTCCGGCTCAACAACTATGACCCCAACTGCCTGCGGCGAAGACCCTCAGATGAGAACAACATCAGTCCTGCTGAGATCTCTCAATGGACAAACCACCGTGTGATGGAGTGGCTGCGGTCTGTTGATCTGGCTGAATACGCACCCAACCTGAGGGGCAGCGGAGTACACGGAGGACTGatgGTGCTGGAGCCTCGCTTTAATGTGGAGACGATGGCTCTGCTGCTGAATATTCCCCCCAATAAGACTCTGCTGCGGAGGCATCTGGCCACTCACTTTAACCTGCTGGTGGGTTCCGAGGCCCAGCAGCTCAAACAGGAGTGTCTGGAGAATCCAGATTACGCTTTACTCACTGCCACGGCTAAAGTCAAGCCACATAAGCTGGCATTTGTGGGGTTTGGGAGAAAAAAGAAGCAGGAGGACAATGAAGAGTATGTGTGTCCCATGGATGTGGAGATGCCCAAAGGACGCAGCTTCCAGAAGGGCTACAGAGGCATGGAGCTCCAGATCTATGATGATGACCTCGATCGACTGGATCAGATGGAAGACTCTGAAGGGACAGTGAGACAGATTGGAGCTTTCTCTGAGGGCATCAACAACTTAACGAGTATGCTGAAGGATGACGAGTTCTTCTTCCCCAATGCCAGCGTGAAGGATGACGACTCCAACGTGTGAGAAGGAGACCCTCACTCTCgctgctttaatgccaactgaCTGTGCCAACACCTCCATATGAATGCCAAATATACACGTCAGCTCCATGAAACACCATTTCAAAgtatttattacattacaatatgCCTTTTAAGAACATTGTAATAATAAGAGAGTTTGAAGAATGTCTGCCCTGTTTTTTATCAGATTGTTAGTggtcttgtttattttatgctgttttttttttttttttttttcttaaaatgaatagCAGTCCTACTGAAGTTTGCTGGTCATTTTTAAATCATCTTCCTGGATAAATCTGTGACAGGTTGTTACATATATTGGTGTTTGTGCCAGTTGTTATGGTGGCAGAAGAGCACAATGACACTTTCAGTCAAAATCAAAGATATATTTTATATGGATAAGTTAAAGTTGTACACTGCTAATACTGATACTAGCATTGACCTGTTGGATCCAGGTGCATTCTTAAACATGATGTTAAAAGTTTAGATGTTTTTGACttgtacattttcttttcttaagcCAGTATATGCAGAATTAATGCATATGCTTAAAGCAtttgcatgcaaaattctgtacAATATTTTACATCTTGTTTGTAAAGGTTTGCATGTTATTTAAGGCTCGTTTGGATAAAATATTTGTACTTTAATGAGCgtttattctgatttatttttcCACTGCTGCAGTACTTAAAGGATGGCAACGTTCTCATTTATGAAAATGCTATCATGTAGCATCAATATTTAATGCAATACTGGCATAAGCACAAAATTGTAAGCAGCTgggaattatatttaaaataaatacatagtgCCACTCATAACCATTTCAGAGTTACATGTTTGTACTTTGTTGACGTTTACtcgttttttttaaaggagaataAAAGATG
>TCONS_00026334
ttccATACTTTTGACGGCGGTCCAGATTTGGATTAACAGAGCTCAACAAGATGATGTCTGATGCCAGTGACATGTTGGCAGCTGCCTTGGAGCAAATGGATGGTATCATAGCAGGCTCCAAGGCTCTGGACTATTCCAACGGCATCTTTGACTGTCAGTCCCCGACATCGCCCTTCATGGGAAGCCTGCGAGCGCTAAACTTACTAGAGGACCTGAGGGGCATACTGGAGCTCATGGAGactgaagagagagagagcttgcGTTGCCAGATCCCAGACTCCACCGCAGACAGTTTGGTGGAGTGGCTGCATGGTCACCTGTCAAATGGACACATTTCCATCTCTGGTGATGTTTACCAGGACAGACTTAATCGTCTTGAAAGTGATAAAGAATCCCTTGTGCTTCAGGTGAGTGTTTTGACGGATCAAGTGGATGCGCAGGGAGAAAAAATAAGGGACCTAGACCTGTGCCTTGATGAACACCGTGAAAAACTAAACGCCACTGAAGAAATGTTACAGCAGGAGCTCCTGTGCAGGTCAGCATTGGAGACACAAAAGCTAGAGCTGATGACAGAAGTGTCCAATTTGAAACTGAAGTTAGCAGCAATGGATAAAGAGAGACTTGATTTTGATGAGAGATTCGGAGATGAGggtttgATTTTGGAGATCAATGAACTGAGATATCGCATTTCTGAGATGGAGAATGAGCGGTTACAGTATGAAAAGAAACTGAAATCCACTAAGGAGGAGCTGGTTTCACTGAGGAGGCAGCAGGAGGGCAGAGATGGTGTGGATCTGCGGAGGCTGCAGGATGAGAGCGGCTCCAGATCCTCAACGCCCGCAGGCCTCGACGGCACAGAGAGAGATATGGAAGTACAGAAGATGAAGAAGGCAATGGAGTCGCTGATGGCGGCAAATGAGGAGAAGGATCGCAAGATTGAGGAGTTGCGGCAGTCACTAATGCGTTACAAGAAAGTGCAAGAGATGGTCATGTCAGCCCATGGGAGAAAAGAAAAGGTCAAAGAAGGAGACAGTGATGAGAGTAACAGCGACAGCTCCCTCTCCATGTCCACCGCTCTCTCCTTCTCCATTGACACCGACAAATCTCTGCTCGCGTACACAGAGGAAGCTGCCAGAGCTCAAAATGAGGCCTCAACATTCGTCAGTACACTCCAAGTGCCATCGCTCACAGTGTCATCACCAGACAAAGCAGACAGCGACTCAGTCCTGGAACACATGCAGTCAAGTGATAAAGAGTGCGAGGAGCCAGATCAGTCACAGGAGACCCCATTACATGAGAGTCCCGAGAGTTCAGAAGTCACAAAATCAGGGAGCCAAGGGAACCTCGATGGGGGAACCAGTGAAAAGAGCAAAAAATTTGATGAGTTCAACAAGATCACTACTTTACCACCCAAATCGACAAGCTCTTCTGGTACTGCTGAGGATGACAGTTTTGGCACCAGGAAAATGAGATCATCATTTGGACGGGGCTTTTTCAAGCTCAAGGGTGGCAAGAGGACTGCCAGCGCCCCAAATTTATCTGAGACGGAGAGGGACGGCACTGACCATCTGGATCTGGCAGGCCTGCCACAGAGGTCAGCTGACAGCGACAGCACACACACTCTCCCCATTTCACCAGAGGGCAAGAAGAAGTCCAAAGGATTTAAAGCACTCTTTGGAAAGCTCAAAAGAAGTCAGTCGACCACATTCAACCTGGATGATAACCTGTCAGAAAGTGAGTTTAAGCGTGGTGGAGTCAGAGCCACTGCTGGACCCAGACTGggatggtcacgtgacctgcaGAACACCAACAGTGATCTTGATGCCCCATTTGCACGATGGTCCCGGGAGCAGGTGTGTGACTGGATGCAGGAGCAGGGATTGGGACTGTATGTGACTTTGGCGAGGCAGTGGGTCTCTTCCGGGCAGACGCTTCTGCAGGCGTCCCAACATGACTTGGAAAGAGAGCTGGGAATAAAACACCCGCTACACAGGAAGAAACTCCAGCTGGCCCTGCAGGCTCTGGGCTCAGAGGAAGACGACAACAAGGGCAAACTAGACTACCACTGGGTTACAAGGTGGCTTGATGACATCGGCCTCCCGCAGTACAAGACTCAGTTTGACGAGGGACGAGTGGATGGACGGATGCTTCACTATATGACTGTGGATGACCTGTTATCTCTGAAAGTGGGCAGCGTTCTTCATCACCTTAGTATTAAAAGAGCCATCCAGGTGCTCCGGCTCAACAACTATGACCCCAACTGCCTGCGGCGAAGACCCTCAGATGAGAACAACATCAGTCCTGCTGAGATCTCTCAATGGACAAACCACCGTGTGATGGAGTGGCTGCGGTCTGTTGATCTGGCTGAATACGCACCCAACCTGAGGGGCAGCGGAGTACACGGAGGACTGatgGTGCTGGAGCCTCGCTTTAATGTGGAGACGATGGCTCTGCTGCTGAATATTCCCCCCAATAAGACTCTGCTGCGGAGGCATCTGGCCACTCACTTTAACCTGCTGGTGGGTTCCGAGGCCCAGCAGCTCAAACAGGAGTGTCTGGAGAATCCAGATTACGCTTTACTCACTGCCACGGCTAAAGTCAAGCCACATAAGCTGGCATTTGTGGGGTTTGGGAGAAAAAAGAAGCAGGAGGACAATGAAGAGTATGTGTGTCCCATGGATGTGGAGATGCCCAAAGGACGCAGCTTCCAGAAGGGCTACAGAGGCATGGAGCTCCAGATCTATGATGATGACCTCGATCGACTGGATCAGATGGAAGACTCTGAAGGGACAGTGAGACAGATTGGAGCTTTCTCTGAGGGCATCAACAACTTAACGAGTATGCTGAAGGATGACGAGTTCTTCTTCCCCAATGCCAGCGTGAAGGATGACGACTCCAACGTGTGAGAAGGAGACCCTCACTCTCgctgctttaatgccaactgaCTGTGCCAACACCTCCA
>TCONS_00026335
ATGATGTCTGATGCCAGTGACATGTTGGCAGCTGCCTTGGAGCAAATGGATGGTATCATAGCAGttagtaagGCTCTGGGCTCAGAGGAAGACGACAACAAGGGCAAACTAGACTACCACTGGGTTACAAGGTGGCTTGATGACATCGGCCTCCCGCAGTACAAGACTCAGTTTGACGAGGGACGAGTGGATGGACGGATGCTTCACTATATGACTGTGGATGACCTGTTATCTCTGAAAGTGGGCAGCGTTCTTCATCACCTTAGTATTAAAAGAGCCATCCAGGTGCTCCGGCTCAACAACTATGACCCCAACTGCCTGCGGCGAAGACCCTCAGATGAGAACAACATCAGTCCTGCTGAGATCTCTCAATGGACAAACCACCGTGTGATGGAGTGGCTGCGGTCTGTTGATCTGGCTGAATACGCACCCAACCTGAGGGGCAGCGGAGTACACGGAGGACTGatgGTGCTGGAGCCTCGCTTTAATGTGGAGACGATGGCTCTGCTGCTGAATATTCCCCCCAATAAGACTCTGCTGCGGAGGCATCTGGCCACTCACTTTAACCTGCTGGTGGGTTCCGAGGCCCAGCAGCTCAAACAGGAGTGTCTGGAGAATCCAGATTACGCTTTACTCACTGCCACGGCTAAAGTCAAGCCACATAAGCTGGCATTTGTGGGGTTTGGGAGAAAAAAGAAGCAGGAGGACAATGAAGAGTATGTGTGTCCCATGGATGTGGAGATGCCCAAAGGACGCAGCTTCCAGAAGGGCTACAGAGGCATGGAGCTCCAGATCTATGATGATGACCTCGATCGACTGGATCAGATGGAAGACTCTGAAGGGACAGTGAGACAGATTGGAGCTTTCTCTGAGGGCATCAACAACTTAACGAGTATGCTGAAGGATGACGAGTTCTTCTTCCCCAATGCCAGCGTGAAGGATGACGACTCCAACGTGTGA

Function

symbol description
ppfibp1b Predicted to be involved in neuromuscular junction development. Predicted to be active in presynaptic active zone. Orthologous to human PPFIBP1 (PPFIA binding protein 1).

GO:

id name namespace
GO:0007528 neuromuscular junction development biological_process
GO:0050808 synapse organization biological_process
GO:0048786 presynaptic active zone cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-060503-47 Predicted to be involved in neuromuscular junction development. Predicted to be active in presynaptic active zone. Orthologous to human PPFIBP1 (PPFIA binding protein 1).

Ensembl:

ensembl_id ENSDARG00000100057

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00026333 False 4086 mRNA 0.46 27 15469015 15551456
TCONS_00026334 False 2962 mRNA 0.51 26 15469857 15551360
TCONS_00026335 True 960 mRNA 0.52 10 15469913 15532016

Neighbor

gene id symbol gene type direction distance location
XLOC_013315 endouc coding downstream 1569 15459318 ~ 15467446 (-)
XLOC_013314 polr3b coding downstream 48847 15382029 ~ 15420168 (-)
XLOC_013313 rfx4 coding downstream 95395 15334117 ~ 15373620 (-)
XLOC_013312 ric8b coding downstream 139544 15287065 ~ 15329471 (-)
XLOC_013311 tmem263 coding downstream 199743 15259388 ~ 15269272 (-)
XLOC_013317 si:ch211-245j22.3 coding upstream 2925 15554381 ~ 15559817 (-)
XLOC_013318 arntl2 coding upstream 18171 15569627 ~ 15610856 (-)
XLOC_013319 BX928740.1 coding upstream 36631 15588087 ~ 15588201 (-)
XLOC_013320 si:ch211-219a15.3 coding upstream 219005 15770461 ~ 15771554 (-)
XLOC_013321 CR854977.1 coding upstream 324206 15875662 ~ 15875780 (-)
XLOC_013384 BX323829.1 misc upstream 3990646 19542102 ~ 19542231 (-)
XLOC_013310 NA non-coding downstream 277203 15188017 ~ 15191812 (-)
XLOC_013308 BX649610.1 non-coding downstream 432746 15036151 ~ 15036269 (-)
XLOC_013300 NA non-coding downstream 703132 14763903 ~ 14765883 (-)
XLOC_013294 BX950204.1 non-coding downstream 1924648 13544250 ~ 13544367 (-)
XLOC_013293 BX890576.1 non-coding downstream 1990793 13477102 ~ 13478222 (-)
XLOC_013323 NA non-coding upstream 387805 15939261 ~ 15970573 (-)
XLOC_013324 NA non-coding upstream 439998 15991454 ~ 16018087 (-)
XLOC_013327 NA non-coding upstream 673334 16224790 ~ 16307937 (-)

Expression


Co-expression Network