XLOC_013318 (arntl2)


Basic Information

Item Value
gene id XLOC_013318
gene name arntl2
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007129.7
NCBI id CM002902.2
chromosome length 51023478
location 15569627 ~ 15610856 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00026337
ACAAAACAAGTAtttcaaatttattatttaattcattaaagcAAAACTATCCAGACACATTCACATAAATATAATAGGCCTAACTAACCTacttgtttaattaaaattatcCCAGCAATGTTACTGGTACACATTCACCAAATACCTCAATATAACAAACATTTCTAGTTTAAACCTACATCTGATATTGCAGGAACTGAACGCGCTCTGCTCGAGTTGCATTGCTACAATTGAAAGGACGACCGTCCATCCGTCCGGCGCTCGTTCACTTCAGCACCGCATACCGCCATCGCATCCGTGACCGCATTTTTTCTCGGCTTGCATAACATATCGCGTGACTTACTAGGTTAGTAACGTGAGGGAGCGGACAGGAGAAGGCGGTGTTGATGATGGTAGGAGGAGATTGCGCGTCGTCTTCTTCCGCGTTTCCCCGGATTTCAACCACTGTCCTGCTTCCATCGTGTCCTCTCCTTGCACGTTTTTACGCTCAGCCCACCCTCCCAATTCAGTtagttgtaaagaaaaaaaattaaagcaattaCACAGGCCTCGCCGCCCCCCCACCTTCCGCCTTTACCTTTCCTCTCTTCTTTCTCCCCCCTCTTTTGCAAATAACTACCGCCGCCTTCGTTCTCCACATGCGGCATCGGAGCCCTGGGCCGCGGCGTACCGGCTCCAGCCATGTCGTCGAGGAACACAGCGGCTGGCGGCGGTGACGGAGCGACGGGGGAAAACACAGGAGATGTGCTGGAGGAGGAGCCTCAGGGTCTCTCTGCGTCTTTGTCTGGTTTGATGACCCCCACATCAGCCTCAAGCCTCATGGAGCTGCCCAGGAAGAGGAAAGGCAGCATGGACAACCTGGAAATGAAATCTGCATCAAATCTAGATGAGGATATGGAGGACGATGCGGGAAGATCGGAAGATGACCAGCACTTAAAAATTAAGTGCATCAGGGAACCTCACAGTCAGATTGAAAAGCGAAGGCGAGATAAGATGAATAATTTGATTGACGAGTTGGCAGCGATGATTCCCACCTGTAACCCAATGTCCCGTAAACTCGACAAACTCACTGTGCTACGAATGGCTGTCCAGCACCTCAAATCGCTCAAAGGAGCAACCAGCTCTTTTGCAGAAGCCAATTACAAACCTGCATTCCTACCAGATGATGAACTCAAGCACCTCGTCCTGAGGGCAGCGGATGGATTTCTCTTTGTGGTTGGCTGTGATCGTGGAAAAATAGTCTTTGTCTCAGAATCGGTTTCAAAAACTCTGAACTACAGTCGGACGGAGTTAATTGGACAGAGTCTGTTTGATTATGTTCATCCAAAGGACATTGGGAAAGTGAAGGAACAGCTGTCCGCCTCTGAACTCTATCCGCGTGAGCGCCTCATAGACGCCAAAACGGGGCTGCAGGTGCAGGCTGAGCTCCCAGTCGGATCGGCTCGGCTTTGCTCAGGAGCCCGGCGCTCGTTCTTCTGCCGAATGAAGTACAACAAAATTACTGTAAAAGAGGAAAAGGACTTCCAGGCTGGTGCATCTAAAAAGAAAGAGTCGCAGCGGTACTGCACCGTCCACTGCACGGGCTACATGCGCACCTGGCCTACGCGTCAGCTGGCCACTGAGGGGGAGGCCGAGGCGGATAAAGAGAGCTCCCACTTCAGCTGTCTGGTAGCGATGGGCcgtgttcatccacacactctcccGCAGGCCAATGGAGAGATCAAGGTCAAACCCACTGAGTTCGTCACCCGCTATGCCATGGATGGCAAATTCACCTTCGTGGATcaacgAGCCACCACTATTCTGGGTTATTTACCTCAGGAGCTGCTGGGAACATCCTGCTATGAATACTTCCACCTGGACGACCTGCCGCACCTGGCCGAAAGACATAGAAAAGTGCTGAGGAGTAAAGAAAAGATTGAGACAAACTGCTATAAGTTCAAAACAAAATCTGGCTCTTTTGTCAATTTACAAAGTCAGTGGTTTAGTTTTATAAATCCCTGGACCAAAGAAGTAGAATACATAGTGTCAACCAACACGGTTGTATCCGGTAAAAGTAATCCAGGTGGATCAGGGGATAAAGCAGAGCAGCCGAGCAGCTCCAAGGCCTCGGAAGatgatgCCAAGAAATCCCAACAAGTTCCAATCATCCCAGGGATCTCCAGTGCATCTGGCATGATTTACGCAGGGTGCATAGGGACCCAAATCGCTAACGAGATAATGGACTTTAATAGGATGAACTCGTCACCATCCAGCGGCAATACCAGTCCGTTCAGTTTACTGCAGGACAAGTCTCCACTGGCCCTCGCGCAGGCCAGCAGCaatGTGCCAAATGGGGAAGCAACAGACGTGGAGATGCCTGGCAAATCAAGCTCTGAGGAAGAAGCACGGGGCGGACCTTTCTCAACTGGGGACAATCTCATGGAGGCGAGTTCTCAGCTGGATCTGGAAGGGGTTCCTGGTTTGGGTGCTCTGAGCACTGATGAAGCTGCCATGGCCGTCATTATGAGCTTACTGGAGACAGATGCCAACCTAGGTGAAGCCGTGAACTTTGACGAGATGCACTGGTCTCTCTGAACATACAGCCATCTTacctggagctttttcaaaagAACCATCCAGTCATTTTCACAGGGCAGCAAGCCTTTGACAGTTATCtgacttttatgtttttaatttattagtgTTTTTAATTCATCTGGAAAAGCTGCGAGGCAGGTGATCTGAAGGCTGCTCCGGGTGAAGGGGTTTCTCTAAATACCTTAATCTGAGTTCCTTAAGCAACAGGACCAGGTTTTATATGGTCTGGTGTGCATTTCTTCAGCTCAGCTCTGAGGTCACTTCTACCCCGTTGGCATGAGCGAGAGatgttcttaaaatgttttatgaaacATGCCTCAGCCAAGCCATAAGGCAAGAACCCAAATGCTCTGCTGTGAATCAGTGGAATGAGGATTTTAAAGCTCTTTCTTTAGTCAATCAACACTTGAACTGTTCATGGATGCTTTGAGGCATAGCtggactgtttttcttttttatatatatatatatatgtataaatgtcatGGGTTTCCTTTGGCAAGGGAACTCTTGTAGTTATTTTACCCTTTTAGAGCAGAAATTGTCttgaatttaatgttttatgatgAACGAGAGCGGAACAACAGGGAGGGTTTTTGATAAGCGCTTGTCAACCAGAATTACTTGAAAAGACTAtgtggaaaaatctgaaaatttgaGGATCACCGTTAGGCCTgacgtttgttttgtttttcctctttagtcttcagacctgtgtgtgtgtgaatgtgtgcttTTCCCTCAGACCTTTGTCTGTCCTGCCAGACTGATCTGCTCTTGAGAAGGAGATATTTCTGAAGTTCACAGGGCCTGGGACAACATACTCGGTTGTTGCACCCAACATTGGCACTAAGTTTGGCTTAGAATTTGATCTGCTGAAGCGGTGTCTGGATGGAGATCAGCAACAGGTAAAATGGTGATCGAAACTCTGGACAAAGTTGTCCATTAATAAGGGCAGGGTCTCTCAGGGAACAATTCATTAAACACCTTTTCAAAATCATATTTTGGATTAGCCAAGTACCACTTTTTCTTGAGGACTTAAACATTGTTTAAGTTCAAAGGCAAAGACATGCTTATGTGATCAGCATTTATTAGGCAATTGTTGTTTTGGAATAAAAGCTGTAGATGAAAAAGAGACCGCTTAAGTTCTCTATGTCTCTGGATTTATTAgctatgggtttgagtaaaatattaatgtttattttattgtataaatttCTGATAACAATTactcatttacaaataaaacaaagtcaTTTTAGAGATTTTTAAGCCACATgtagagaataacaaatgttcAAAATATGCATATTTGTTGGTTGTTCCACCAACTGttgatttcttaactcttctgaatttaaaacattgaATATAAATATGTCAGAAAACCTCAAAAACACTGTTCCTGTATTTCATGCACAAAAAAAGGctttaaatgacattattttaaattaggaagTCATCAGTATTTACAGgataaaacaaatgttatattTTACTCGAACACAGTCTTATGCACACCAGGATGGTTTTTGCTTGTGATTATTGCTGATGCTAAACGGTTTATGACTAAACAAAAGGTGTTgtgcaaaaaaaatgcaaaacagcaCACATAATGCATAATTCTTTGGTTTGAAGTTCAAAACTGGCCAATCAACGAGTTTTGTTTACATGCCTTCAACTGCTGAAGCTACAGTAAAACAACTTGGTGGCCCTCAAGTATAAAACGGTAGCTGAGCACAGAGGAATTACAGATCAAATAGGATTCAATGATGAATTTAATTTCACTGCATTTTATTTCATGATTTGTAACTTTCTCCTGCACACTTTTGACCAAGAGTTTGTGTGCTGCAGTGGAGGAGACTAAACAGAAGTAGAATAGCTTATGCTGAGTTCAAACTGCATGATTTTCTAAGTTGTCGTGTCACAGATgattttacactgcatg
>TCONS_00027277
ttgaaaaataaGGAAATGAAATCTGCATCAAATCTAGATGAGGATATGGAGGACGATGCGGGAAGATCGGAAGATGACCAGCACTTAAAAATTAAGTGCATCAGGGAACCTCACAGTCAGATTGAAAAGCGAAGGCGAGATAAGATGAATAATTTGATTGACGAGTTGGCAGCGATGATTCCCACCTGTAACCCAATGTCCCGTAAACTCGACAAACTCACTGTGCTACGAATGGCTGTCCAGCACCTCAAATCGCTCAAAGGAGCAACCAGCTCTTTTGCAGAAGCCAATTACAAACCTGCATTCCTACCAGATGATGAACTCAAGCACCTCGTCCTGAGGGCAGCGGATGGATTTCTCTTTGTGGTTGGCTGTGATCGTGGAAAAATAGTCTTTGTCTCAGAATCGGTTTCAAAAACTCTGAACTACAGTCGGACGGAGTTAATTGGACAGAGTCTGTTTGATTATGTTCATCCAAAGGACATTGGGAAAGTGAAGGAACAGCTGTCCGCCTCTGAACTCTATCCGCGTGAGCGCCTCATAGACGCCAAAACGGGGCTGCAGGTGCAGGCTGAGCTCCCAGTCGGATCGGCTCGGCTTTGCTCAGGAGCCCGGCGCTCGTTCTTCTGCCGAATGAAGTACAACAAAATTACTGTAAAAGAGGAAAAGGACTTCCAGGCTGGTGCATCTAAAAAGAAAGAGTCGCAGCGGTACTGCACCGTCCACTGCACGGGCTACATGCGCACCTGGCCTACGCGTCAGCTGGCCACTGAGGGGGAGGCCGAGGCGGATAAAGAGAGCTCCCACTTCAGCTGTCTGGTAGCGATGGGCcgtgttcatccacacactctcccGCAGGCCAATGGAGAGATCAAGGTCAAACCCACTGAGTTCGTCACCCGCTATGCCATGGATGGCAAATTCACCTTCGTGGATcaacgAGCCACCACTATTCTGGGTTATTTACCTCAGGAGCTGCTGGGAACATCCTGCTATGAATACTTCCACCTGGACGACCTGCCGCACCTGGCCGAAAGACATAGAAAAGTGCTGAGGAGTAAAGAAAAGATTGAGACAAACTGCTATAAGTTCAAAACAAAATCTGGCTCTTTTGTCAATTTACAAAGTCAGTGGTTTAGTTTTATAAATCCCTGGACCAAAGAAGTAGAATACATAGTGTCAACCAACACGGTTGTATCCGGTAAAAGTAATCCAGGTGGATCAGGGGATAAAGCAGAGCAGCCGAGCAGCTCCAAGGCCTCGGAAGatgatgCCAAGAAATCCCAACAAGTTCCAATCATCCCAGGGATCTCCAGTGCATCTGGCATGATTTACGCAGGGTGCATAGGGACCCAAATCGCTAACGAGATAATGGACTTTAATAGGATGAACTCGTCACCATCCAGCGGCAATACCAGTCCGTTCAGTTTACTGCAGGACAAGTCTCCACTGGCCCTCGCGCAGGCCAGCAGCaatGTGCCAAATGGGGAAGCAACAGACGTGGAGATGCCTGGCAAATCAAGCTCTGAGGAAGAAGCACGGGGCGGACCTTTCTCAACTGGGGACAATCTCATGGAGGCGAGTTCTCAGCTGGATCTGGAAGGGGTTCCTGGTTTGGGTGCTCTGAGCACTGATGAAGCTGCCATGGCCGTCATTATGAGCTTACTGGAGACAGATGCCAACCTAGGTGAAGCCGTGAACTTTGACGAGATGCACTGGTCTCTCTGAACATACAGCCATCTTacctggagctttttcaaaagAACCATCCAGTCATTTTCACAGGGCAGCAAGCCTTTGACAGTTATCtgacttttatgtttttaatttattagtgTTTTTAATTCATCTGGAAAAGCTGCGAGGCAGGTGATCTGAAGGCTGCTCCGGGTGAAGGGGTTTCTCTAAATACCTTAATCTGAGTTCCTTAAGCAACAGGACCAGGTTTTATATGGTCTGGTGTGCATTTCTTCAGCTCAGCTCTGAGGTCACTTCTACCCCGTTGGCATGAGCGAGAGatgttcttaaaatgttttatgaaacATGCCTCAGCCAAGCCATAAGGCAAGAACCCAAATGCTCTGCTGTGAATCAGTGGAATGAGGATTTTAAAGCTCTTTCTTTAGTCAATCAACACTTGAACTGTTCATGGATGCTTTGAGGCATAGCtggactgtttttcttttttatatatatatatatatgtataaatgtcatGGGTTTCCTTTGGCAAGGGAACTCTTGTAGTTATTTTACCCTTTTAGAGCAGAAATTGTCttgaatttaatgttttatgatgAACGAGAGCGGAACAACAGGGAGGGTTTTTGATAAGCGCTTGTCAACCAGAATTACTTGAAAAGACTAtgtggaaaaatctgaaaatttgaGGATC
>TCONS_00026338
CGCCGCCTTCGTTCTCCACATGCGGCATCGGAGCCCTGGGCCGCGGCGTACCGGCTCCAGCCATGTCGTCGAGGAACACAGCGGCTGGCGGCGGTGACGGAGCGACGGGGGAAAACACAGGAGATGTGCTGGAGGAGGAGCCTCAGGGTCTCTCTGCGTCTTTGTCTGGTTTGATGACCCCCACATCAGCCTCAAGCCTCATGGAGCTGCCCAGGAAGAGGAAAGGCAGCATGGACAACCTGGAAATGAAATCTGCATCAAATCTAGATGAGGATATGGAGGACGATGCGGGAAGATCGGAAGATGACCAGCACTTAAAAATTAAGTGCATCAGGGAACCTCACAGTCAGATTGAAAAGCGAAGGCGAGATAAGATGAATAATTTGATTGACGAGTTGGCAGCGATGATTCCCACCTGTAACCCAATGTCCCGTAAACTCGACAAACTCACTGTGCTACGAATGGCTGTCCAGCACCTCAAATCGCTCAAAGGAGCAACCAGCTCTTTTGCAGAAGCCAATTACAAACCTGCATTCCTACCAGATGATGAACTCAAGCACCTCGTCCTGAGGGCAGCGGATGGATTTCTCTTTGTGGTTGGCTGTGATCGTGGAAAAATAGTCTTTGTCTCAGAATCGGTTTCAAAAACTCTGAACTACAGTCGGACGGAGTTAATTGGACAGAGTCTGTTTGATTATGTTCATCCAAAGGACATTGGGAAAGTGAAGGAACAGCTGTCCGCCTCTGAACTCTATCCGCGTGAGCGCCTCATAGACGCCAAAACGGGGCTGCAGGTGCAGGCTGAGCTCCCAGTCGGATCGGCTCGGCTTTGCTCAGGAGCCCGGCGCTCGTTCTTCTGCCGAATGAAGTACAACAAAATTACTGTAAAAGAGGAAAAGGACTTCCAGGCTGGTGCATCTAAAAAGAAAGAGTCGCAGCGGTACTGCACCGTCCACTGCACGGGCTACATGCGCACCTGGCCTACGCGTCAGCTGGCCACTGAGGGGGAGGCCGAGGCGGATAAAGAGAGCTCCCACTTCAGCTGTCTGGTAGCGATGGGCcgtgttcatccacacactctcccGCAGGCCAATGGAGAGATCAAGGTCAAACCCACTGAGTTCGTCACCCGCTATGCCATGGATGGCAAATTCACCTTCGTGGATcaacgAGCCACCACTATTCTGGGTTATTTACCTCAGGAGCTGCTGGGAACATCCTGCTATGAATACTTCCACCTGGACGACCTGCCGCACCTGGCCGAAAGACATAGAAAAGGTACAGAGTCTCACTATCAGGAACACTGCAGCTGTAAACAAAGTTTCCTGAAAGTGTTTTCCAAGAACCCTGGCTCCTTTCCCAGCCGTTTGTACAGAGTAGCCAAATCCCCATCATCCATCATTAGTCTTGCTTCTAAAGGACATTACAACAGCTTTCAATGGCAGAAACACGAGGCCAGAGCCTCACTGGGGTTTAAACTGGATTATGTGCCATAtgcaaataaaggtgaatttcaGATCA

Function

symbol description
arntl2 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Acts upstream of or within circadian rhythm and photoperiodism. Predicted to be located in cytoplasm. Predicted to be part of aryl hydrocarbon receptor complex. Predicted to be active in nucleus. Human ortholog(s) of this gene implicated in hypertension and type 2 diabetes mellitus. Orthologous to human ARNTL2 (aryl hydrocarbon receptor nuclear translocator like 2).

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0009648 photoperiodism biological_process
GO:0007623 circadian rhythm biological_process
GO:0009416 response to light stimulus biological_process
GO:0005634 nucleus cellular_component
GO:0005667 transcription regulator complex cellular_component
GO:0005737 cytoplasm cellular_component
GO:0005515 protein binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0046983 protein dimerization activity molecular_function

KEGG:

id description
ko03000 Transcription factors

ZFIN:

id description
ZDB-GENE-000509-2 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Acts upstream of or within circadian rhythm and photoperiodism. Predicted to be located in cytoplasm. Predicted to be part of aryl hydrocarbon receptor complex. Predicted to be active in nucleus. Human ortholog(s) of this gene implicated in hypertension and type 2 diabetes mellitus. Orthologous to human ARNTL2 (aryl hydrocarbon receptor nuclear translocator like 2).

Ensembl:

ensembl_id ENSDARG00000041381

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00026337 False 4528 mRNA 0.44 17 15569627 15610856
TCONS_00027277 False 2395 lncRNA 0.47 16 15570911 15592525
TCONS_00026338 True 1521 non_stop_decay 0.52 11 15578502 15610237

Neighbor

gene id symbol gene type direction distance location
XLOC_013317 si:ch211-245j22.3 coding downstream 9810 15554381 ~ 15559817 (-)
XLOC_013316 ppfibp1b coding downstream 18171 15469015 ~ 15551456 (-)
XLOC_013315 endouc coding downstream 102181 15459318 ~ 15467446 (-)
XLOC_013314 polr3b coding downstream 149459 15382029 ~ 15420168 (-)
XLOC_013313 rfx4 coding downstream 196007 15334117 ~ 15373620 (-)
XLOC_013320 si:ch211-219a15.3 coding upstream 159605 15770461 ~ 15771554 (-)
XLOC_013321 CR854977.1 coding upstream 264806 15875662 ~ 15875780 (-)
XLOC_013322 plekhg7 coding upstream 276974 15887830 ~ 15932704 (-)
XLOC_013323 NA coding upstream 328405 15939261 ~ 15970573 (-)
XLOC_013324 NA coding upstream 380598 15991454 ~ 16018087 (-)
XLOC_013384 BX323829.1 misc upstream 3931246 19542102 ~ 19542231 (-)
XLOC_013310 NA non-coding downstream 377815 15188017 ~ 15191812 (-)
XLOC_013308 BX649610.1 non-coding downstream 533358 15036151 ~ 15036269 (-)
XLOC_013300 NA non-coding downstream 803744 14763903 ~ 14765883 (-)
XLOC_013294 BX950204.1 non-coding downstream 2025260 13544250 ~ 13544367 (-)
XLOC_013293 BX890576.1 non-coding downstream 2091405 13477102 ~ 13478222 (-)
XLOC_013327 NA non-coding upstream 613934 16224790 ~ 16307937 (-)
XLOC_013329 NA non-coding upstream 761354 16372210 ~ 16377341 (-)

Expression


Co-expression Network