Fish Transcriptome and Expression Database

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model fish

XLOC_013321 (CR854977.1)

Basic Information

Item	Value
gene id	XLOC_013321
gene name	CR854977.1
gene type	non-coding
species	zebrafish (Danio rerio)
category of species	model fish

Chromosome Information

Item	Value
chromosome id	NC_007129.7
NCBI id	CM002902.2
chromosome length	51023478
location	15875662 ~ 15875780 (-)
genome version	GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00026341
GTCAATGAGTcaatatcaccctgcagcccaagaccaattactcactgaaactaagcagggctgagcttggtcagtacctggacaagacaccacatgggaaaactaggttgctgttggaa

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id

ENSDARG00000085957

RNA

RNA id	representative	length	rna type	GC content	exon number	start site	end site
TCONS_00026341	True	119	rRNA	0.48	1	15875662	15875780

Notice the +/- strand.
Display format: symbol/gene id: RNA id. (Except when gene id is similar to RNA id.)
You can browse transcripts by dragging.
A more detailed transcript can be viewed by the zoom button in the upper right corner.

Neighbor

gene id	symbol	gene type	direction	distance	location
XLOC_013320	si:ch211-219a15.3	coding	downstream	104108	15770461 ~ 15771554 (-)
XLOC_013318	arntl2	coding	downstream	264806	15569627 ~ 15610856 (-)
XLOC_013319	BX928740.1	coding	downstream	287461	15588087 ~ 15588201 (-)
XLOC_013317	si:ch211-245j22.3	coding	downstream	315845	15554381 ~ 15559817 (-)
XLOC_013316	ppfibp1b	coding	downstream	324206	15469015 ~ 15551456 (-)
XLOC_013322	plekhg7	coding	upstream	12050	15887830 ~ 15932704 (-)
XLOC_013323	NA	coding	upstream	63481	15939261 ~ 15970573 (-)
XLOC_013324	NA	coding	upstream	115674	15991454 ~ 16018087 (-)
XLOC_013325	sspn	coding	upstream	235405	16111185 ~ 16123222 (-)
XLOC_013326	slc6a15	coding	upstream	275994	16151774 ~ 16181952 (-)
XLOC_013384	BX323829.1	misc	upstream	3666322	19542102 ~ 19542231 (-)
XLOC_013310	NA	non-coding	downstream	683850	15188017 ~ 15191812 (-)
XLOC_013308	BX649610.1	non-coding	downstream	839393	15036151 ~ 15036269 (-)
XLOC_013300	NA	non-coding	downstream	1109779	14763903 ~ 14765883 (-)
XLOC_013294	BX950204.1	non-coding	downstream	2331295	13544250 ~ 13544367 (-)
XLOC_013327	NA	non-coding	upstream	349010	16224790 ~ 16307937 (-)
XLOC_013329	NA	non-coding	upstream	496430	16372210 ~ 16377341 (-)
XLOC_013345	NA	non-coding	upstream	1615541	17491321 ~ 17492706 (-)

Expression

Co-expression Network