XLOC_013323


Basic Information

Item Value
gene id XLOC_013323
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007129.7
NCBI id CM002902.2
chromosome length 51023478
location 15939261 ~ 15970573 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00027278
GTGCAGTGAGAGATACAGGCtgaaggaagaagaaaaaaaaaacattctccaGAGAGTAGGAGGACGAGAGTTGCGCGGGTCTGTCTGTTGCAGCGTGAAGGAGGGGAGAGAAACCATTACGTAATAGAGAAGTTGTGCAGGAGAGTGGAGTTGAGCTGAGCCGCAATGCTGTGCAGCAGAGACACTTCACTTCAGTCAGaaaccggagcacccagggagaaacccacgccaacacgcaAAAACATGAACACAGAAATGCAAAGCCGGAACTTGAACTTCAACAGAATATAAACATACTGTAATtatttgggtgaaccatccctttactGTACTACTTTTACTGTTTCTTTGGTATATTCCATTATTGGCGTTAATAGTTACTcgtttcaacattcttcaaagtatcttcttttgtgtttaacagaacaaaatattcaaaatgtttGGAACAAATcaaaagatcacagatttttggTTAAATATCCATTAGCCACACACTTCTATGTTTCTGTCTTCAATTATAGAAACTGGACAAACATGTTCCAATTGTAACAAAAGACTGAACAAAAACTGGAGCGTCAACAATGCACTAAAACCCTAGGACACGCAGTCTGACAGCTCCCTTTGACGTCATTTCACACTTTGCAATACTCGGTGTAAACTAGCCTGCAGAATGTATACTCCCTTACAAAACCTCTGAAGTTGTTTCTATAGTTACAAATGTAATTTAACAAATATTGAACCTAGAAAACCACAAAACTTCCTTGCCATGATTTGTTATAATGAGAGAAGTTGCCATTGTAGTGTATCTATGCAATCTTCCTGATGCAATGCAGAAAATCTAGTTAATGCTAAAAGGCTTAAGCAAAGATCAGTGGTGTATATTGTGACCGCAGCACTTTGAATGCCAGAAAGCAGATGGTGAACTGAAGTGTCATTTGTTCTACACCTTAATTGCTAGATGAGTCATCACACAACAACGTAAAAGTGATTCAACGCAACCAGAAATTGAGCTGGGCGTGTGGTTATTCTACATAATATTTCTTAAGACTCAAGCGGATGTGTTCCTACATGAACTCATGAAAAAATGTGAAGCGTTTCAGAAACCGTTAAATGACATCTCATTTGGCTTTAATAAGTTTTATAATAAGCTTTAACAAGGTGCACTCAGTATGTTTTCAAGTGGTTATCGACCACCTttttgttcatccattcattttgcACACATTTTGATCTATATCATCACTCTGAATTATGGTGTTCCCTgataactgtatgtatgtataatgtacatttttagtATACAGTACGTTGTTGTCATATTTTTCTATACTTGTCAGGAGCACTATAGGGCTCTAT
>TCONS_00027279
CTAATACAGCGGAAAGGTGCAGTGAGAGATACAGGCtgaaggaagaagaaaaaaaaaacattctccaGAGAGTAGGAGGACGAGAGTTGCGCGGGTCTGTCTGTTGCAGCGTGAAGGAGGGGAGAGAAACCATTACGTAATAGAGAAGTTGTGCAGGAGAGTGGAGTTGAGCTGAGCCGCAATGCTGTGCAGCAGAGACACTTCACTTCAGTCAGactgcgcgtgacgtgtctgaagagcgaggaggaaTC

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00027278 False 1359 lncRNA 0.38 2 15939261 15970557
TCONS_00027279 True 251 lncRNA 0.51 2 15962040 15970573

Neighbor

gene id symbol gene type direction distance location
XLOC_013322 plekhg7 coding downstream 6557 15887830 ~ 15932704 (-)
XLOC_013321 CR854977.1 coding downstream 63481 15875662 ~ 15875780 (-)
XLOC_013320 si:ch211-219a15.3 coding downstream 167707 15770461 ~ 15771554 (-)
XLOC_013318 arntl2 coding downstream 328405 15569627 ~ 15610856 (-)
XLOC_013319 BX928740.1 coding downstream 351060 15588087 ~ 15588201 (-)
XLOC_013324 NA coding upstream 20881 15991454 ~ 16018087 (-)
XLOC_013325 sspn coding upstream 140612 16111185 ~ 16123222 (-)
XLOC_013326 slc6a15 coding upstream 181201 16151774 ~ 16181952 (-)
XLOC_013327 NA coding upstream 254217 16224790 ~ 16307937 (-)
XLOC_013328 rassf9 coding upstream 344018 16314591 ~ 16320585 (-)
XLOC_013384 BX323829.1 misc upstream 3571529 19542102 ~ 19542231 (-)
XLOC_013310 NA non-coding downstream 747449 15188017 ~ 15191812 (-)
XLOC_013308 BX649610.1 non-coding downstream 902992 15036151 ~ 15036269 (-)
XLOC_013300 NA non-coding downstream 1173378 14763903 ~ 14765883 (-)
XLOC_013329 NA non-coding upstream 401637 16372210 ~ 16377341 (-)
XLOC_013345 NA non-coding upstream 1520748 17491321 ~ 17492706 (-)
XLOC_013349 NA non-coding upstream 1806954 17777527 ~ 17786790 (-)

Expression


Co-expression Network