XLOC_013327


Basic Information

Item Value
gene id XLOC_013327
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007129.7
NCBI id CM002902.2
chromosome length 51023478
location 16224790 ~ 16307937 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00027281
ATTGCATTAATTGGAGAATTCCAACTGGACATAATTGAGCTCTCGAATCTCCAGCTCCAGCTGATATTTGTTTTCCATGTATCTGACCTGATCAGTCTGTCTGTGCTCTTTGTTTCCAGGTACTAACACCACTATTTGTTAGCATTTACATCAATCACAGACGGCTTCTCCTCCTGATCTCCATGACTTTATGTTGCTCTCTGAAACAGCCCAGCTCTGTGTGAAAAGGGTCAAACCCATTGGCCTGCTGATGGATCTCATCTGGAGGAGAGTGTGCTGGATCTCCTGCCTCATGTGTGCTGCACCATCAGTCTTACGCTGGAGAAATGATGGAGCAGTGACCacgaggagagagagagagagagatcagcaACACTTCAAAGCATGCACAGAAACTCACGCCATCTGTTAAAGTCACCAGAAAGGAATCCACTCAAACCCAAAGCATCATCTACTAGAGCGGTGATACAGTGCCAAGCCCAGCAGATACAGGAGACTGGAAATACAGGACACATGGTGCAAATCAAACCCAGGAGAGCGGCGAAAACACACAGGTTAACCCGAAGCAACTATATGCTCCGTTCCACCAAAAAACGTGTCAGAGTAATGCATCTCTGAGGATTAAAAACTTAAAAGCCCACATGAGCAGGGCATCGTGGGAGCGTGTCCTGGCTTTGGGCTTGGGTTCGGCTACCTGCTTTTCCCCTCTGCTGACCCGCGGAAGGCCCTGCGCCTCAGGCTACAGGCCGGCCGCCGCTCCCCTGCTTTCCCCCAGCAGGGGCTTACATTTCAACCGAGCGCTCCAAGCCCTCTTCTGGAGGTGATTAGCCCCCCGAAGCCGTGACAGATTCTTTCCGAGATATCCGCCTCACTCGTGTTTATTTTATCCCAGCTCTCTTTTGTGGATGTGCTGGACATGAAGTAACCCACTTGAAAATGGGTATCGGCTTACATACGCCACGGGACTGGCGGAGGAGTcggaacaacaacaaaaaagaaaagaaagaaagcaacCATTATACATATAAAGAGGACGTCTTTGCATTTATTTGACCTGCTCTTTAGCATGACTCTCTATCTCTTATCTCTTACGCTTGACCCCCATTGGTAGCATCGGTTTGGACGCCCCCTGCCCCCATCGGGTGGCACTGTGGCTACAGACGGCGCTCTCTCTCAGTCTGGGACCCCTAAGTGCCCGACCTCCTCTGTACTTAACTCAATTTCACACTTCAGGTCCGCTACAAAGCCTCCTGAAATACAATCATCTTGTTTATTCTCCACCATCCCAAACAACCTAATGGCTGGCTATTTACGAGCTCCATCATGTGCGTTCAATTTGATCAGACGATGTGTATGTTTTCATGTATTACACGCAATGTAGATCCAAGCATGTCCCAAATGACTGTATGGATTGAGCCCATGGGGAGTAATGAAAGTGGAGTAGTTTCTAAATGGGGAAATTATGCAAGTTCCATATTTTGGTAAATGACAA
>TCONS_00027282
ATTGCATTAATTGGAGAATTCCAACTGGACATAATTGAGCTCTCGAATCTCCAGCTCCAGCTGATATTTGTTTTCCATGTATCTGACCTGATCAGTCTGTCTGTGCTCTTTGTTTCCAGGTACTAACACCACTATTTGTTAGCATTTACATCAATCACAGACGGCTTCTCCTCCTGATCTCCATGACTTTATGTTGCTCTCTGAAACAGCCCAGCTCTGTGTGAAAAGGGTCAAACCCATTGGCCTGCTGATGGATCTCATCTGGAGGAGAGTGTGCTGGATCTCCTGCCTCATGTGTGCTGCACCATCAGTCTTACGCTGGAGAAATGATGGAGCAGTGACCacgaggagagagagagagagagatcagcaACACTTCAAAGCATGCACAGAAACTCACGCCATCTGTTAAAGTCACCAGAAAGtttcaggtttcttctcgaatttctgattttgtgtttctttctggtctttcccgCTGTCACGGAAGCAGTCCggtgaaatgacaaagaaagctgatcctgattggtcctcgtgcgtgcattttaaatgaagattggctcacagaaagaaccttataaagCCAAGCTAAAGTTCGACATTTTAGAAAAACCTTTTTTgatctttttaattaaaaagtcttaaaatgtaaacaactgatAGAAAAACATCACATCatgtaagttgtcatttaataacaatatgtcaataactcaatttttgacaaaaatgtcagatagagaCTTATAaatctaaggtgacgaaatgtcaTTCACTGTAACTATAGTTGGTAACAGATGAACAAACAatatacaatacatttattacagtatcaATGTTCACGTTAGTTAAGGAAAATAAAGTTGTTGAATGTCGGTCCTTGATAAGCACAATGTTGACAATAACAATATTCAAAGTACTGTGCATTTTTACTTtgtgttattaaatacattaattagtGCAATCGTTTTGTAAAGTCTCCAAAATTTGCAGCTCCAAAATTTTGCcactattttttgttgttgtttacatgacATACTttctaattgtttttcttttagttCCATATGTTACTTAAATTGCGTTTTAACATACAATTTTCATTATAGCAGGG
>TCONS_00027283
ATTGCATTAATTGGAGAATTCCAACTGGACATAATTGAGCTCTCGAATCTCCAGCTCCAGCTGATATTTGTTTTCCATGTATCTGACCTGATCAGTCTGTCTGTGCTCTTTGTTTCCAGGTACTAACACCACTATTTGTTAGCATTTACATCAATCACAGACGGCTTCTCCTCCTGATCTCCATGACTTTATGTTGCTCTCTGAAACAGCCCAGCTCTGTGTGAAAAGGGTCAAACCCATTGGCCTGCTGATGGATCTCATCTGGAGGAGAGTGTGCTGGATCTCCTGCCTCATGTGTGCTGCACCATCAGTCTTACGCTGGAGAAATGATGGAGCAGTGACCacgaggagagagagagagagagatcagcaACACTTCAAAGCATGCACAGAAACTCACGCCATCTGTTAAAGTCACCAGAAAGGTTGTCGCAACAAGTTTTGGATTTGGAActtgtttacatgtttttaaaacgTATTCTCCTTTAC
>TCONS_00026348
TGACCACATGGCATCCACAGAGGAATCATATCGTGGGTCAAACCCATTGGCCTGCTGATGGATCTCATCTGGAGGAGAGTGTGCTGGATCTCCTGCCTCATGTGTGCTGCACCATCAGTCTTACGCTGGAGAAATGATGGAGCAGTGACCacgaggagagagagagagagagatcagcaACACTTCAAAGCATGCACAGAAACTCACGCCATCTGTTAAAGTCACCAGAAAGGTATGAGAAGTgcattatgaacattttaattgaTTGAAAAATAGAGAAATATCCAAAACTAATTCTGAGAGCAC
>TCONS_00027284
CACATGGCATCCACAGAGGAATCATATCGTGGACAGTGGTTTGATGTGCCTTTGTGTTGGAGGATGATGTCAGCTGGGTTATTGGGAACACCTGCTGAATTACGCACAATGCTGCCACAAGAGGGGAAAAAGGTTGAGACCTGTGTCTTCTGTGAGTGCATCCAGTGCCattgtgtgtgttcatgtaaGCACGTGTGCAACCCTGGAAACAGACATTCGGCATTCGGCTTATTGTAAAACAGGCAGAGCTTCCTCCACTTTCCCAAATCCTTCTTCCATTACTTTAGGCATAGTTCAGCCGAAAAATGTAAAAGTAGCTGATTTACTCTTCCCCAGGGAATCTAAGGTGTAGGTGATATATTTGTCTTCTTTAGTAGAACATTTTTAGAAAGCTTTTTAGCTGTAACTGTGATCCTTGGTAATTCATGTAATGTAAGTCAACAGCTACTAGCCTGCCAAAAATTATATCCacgtttttcttttgtttgtgtaaaaaactttatttattacgTTATTAGCTTTAATCCAAAGCCTCAGAAAACGGTTCTTAGTGCTTTAATTCTATGAACACAATAGCCTCTGTTGTGCCCTTTATGGCTTGGCATCTTTATTAATCCAAATACCCACGCACGGAGATCAGTCTTTGAATTAAAAgaaatagttcagccaaaaatgataATGCTGttcctgtttgactttctttcttgaAACACAAAACGGTAGGTGCTGATAAATGTTCTGACTACTCTTTTCTAATGAAAGTAAATGGGTTGTAGAGCTCCATCACAACAAAAACACCATAACAAGAATCAAAGAGTAAtgattcaatttctttttttatttcttcttttctaaAGTCAAAG

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

Ensembl:

ensembl_id ENSDARG00000097357

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00027281 False 1492 lncRNA 0.48 3 16224790 16265890
TCONS_00027282 False 1114 lncRNA 0.37 3 16251074 16265890
TCONS_00027283 False 489 lncRNA 0.44 3 16258678 16265890
TCONS_00026348 False 306 lncRNA 0.45 2 16258787 16307937
TCONS_00027284 True 863 lncRNA 0.38 2 16296881 16307933

Neighbor

gene id symbol gene type direction distance location
XLOC_013326 slc6a15 coding downstream 42838 16151774 ~ 16181952 (-)
XLOC_013325 sspn coding downstream 101568 16111185 ~ 16123222 (-)
XLOC_013324 NA coding downstream 206703 15991454 ~ 16018087 (-)
XLOC_013323 NA coding downstream 254217 15939261 ~ 15970573 (-)
XLOC_013322 plekhg7 coding downstream 292086 15887830 ~ 15932704 (-)
XLOC_013328 rassf9 coding upstream 6654 16314591 ~ 16320585 (-)
XLOC_013329 NA coding upstream 64273 16372210 ~ 16377341 (-)
XLOC_013330 mgat4c coding upstream 79808 16387745 ~ 16590056 (-)
XLOC_013331 ampd3b coding upstream 454869 16762806 ~ 16795262 (-)
XLOC_013332 admb coding upstream 490917 16798854 ~ 16801033 (-)
XLOC_013384 BX323829.1 misc upstream 3234165 19542102 ~ 19542231 (-)
XLOC_013321 CR854977.1 non-coding downstream 349010 15875662 ~ 15875780 (-)
XLOC_013319 BX928740.1 non-coding downstream 636589 15588087 ~ 15588201 (-)
XLOC_013310 NA non-coding downstream 1032978 15188017 ~ 15191812 (-)
XLOC_013345 NA non-coding upstream 1183384 17491321 ~ 17492706 (-)
XLOC_013349 NA non-coding upstream 1469590 17777527 ~ 17786790 (-)
XLOC_013351 NA non-coding upstream 1804057 18111994 ~ 18113888 (-)
XLOC_013355 BX470163.3 non-coding upstream 2261304 18569241 ~ 18569322 (-)

Expression


Co-expression Network