XLOC_013328 (rassf9)


Basic Information

Item Value
gene id XLOC_013328
gene name rassf9
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007129.7
NCBI id CM002902.2
chromosome length 51023478
location 16314591 ~ 16320585 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00026349
GGAAGGAAATCCAGGTGCTTGTGTGTCAAGAAGAAAAAGTAGTCTGTGGTGTGACCAAGCACACAACCTGTGCAGACATAGTCAAGGCTTTACTGGAGGATCACAAGACCATACCAGAAAGTAAAAGGCTTTTACATGGGGAACCTAAAGACTTCTGTATCCTGGAGAGGTGGAAGGGTTTTGAGAGGGCACTGCCGCCTCTCACTCGAATCCTCCGGCTGTGGAACGCATGGGGCGATGAGAAACCTTTCATAAAGTTCGTCCTTATGAAGATCAGTGATTTTGTGCCATCATCCAAGGGAGCCAAAAGGGCATCAAAGTCTCGAGGAGCGAGGTCTAAAAGATGGGACCAAGGACCTGCACAGTACGCCAAGACAGTATCAGCAGAGAAGCAAAAACGAATGGTGAAGAAAGCCTTTCGCAAGTTGGAGAAGATCCAGAAAGGAGATACTTCAGAAGGCTCTGAGGAGATTAACAAGCTTATGCAGATGATCATCTCTCAGGATCAGACTATCCGGCAGCAGATCCACCAAATGCGTGAGCTAGATTTGGAGATTGAACATGCAGAGGAACAAATGAGCAGCCCAACACCTCGCTCAAGCATCACAGAAAGTGATGACGGACCGTCTCATTTTGACAACCATTTTCAGGAGTATTTATACACCAGCGATGGAATCGAGCAACTGGATCTACATGTTCGCATACACCAAGAACTCATTGACCAGCTCTCTCAAGATATAGACGTGGAGCTGAGGAGCTGGACTTCTGATTTGGAAGATTTTAAAGGTGCAGCTGCTGCTTGTCCAGAACTAGATGGAGAACCAAACCTCTCGTTGTCCTCAACAGATCTCTTTGAGCTGGAAAACTTACGCAAAGAACTTGAGACAAGCATGAGAGCTGGACTTTCCCTTCATTCCCAAATGCAGGATATTGAGAAGGAACTGCAGCGGAACAAAACATTCTTGCAGTCCCAGAACCAAGAATACCAGCATCTTGTTGCAGAACTTGGTGCACTTGAGGTGGGGGCCTGTCCAGACCAGCCAAACCCTGCATCTCTGAAGACCCAGATCAGGGCCACTGTCTCTGAGCAGGCAACAGGCAAGGTCAGACAGACTTGTTCACCTGCAGATGTGACGGATACAGACTCAGACACTGGAATAAGCTCAACTCACAGTCAGGACTCTTTGTCGCCTTGTGTGGACAGATCACCTCCTCTGGACACCGATGTTTGA
>TCONS_00026350
aatacccgaaattacatgaaactctggaagaAAAGGTCTAAAGTGGTAGAGGAGACACCAGGGAAGGAAATCCAGGTGCTTGTGTGTCAAGAAGAAAAAGTAGTCTGTGGTGTGACCAAGCACACAACCTGTGCAGACATAGTCAAGGCTTTACTGGAGGATCACAAGACCATACCAGAAAGTAAAAGGCTTTTACATGGGGAACCTAAAGACTTCTGTATCCTGGAGAGGTGGAAGGGTTTTGAGAGGGCACTGCCGCCTCTCACTCGAATCCTCCGGCTGTGGAACGCATGGGGCGATGAGAAACCTTTCATAAAGTTCGTCCTTATGAAGATCAGTGATTTTGGAGCCAAAAGGGCATCAAAGTCTCGAGGAGCGAGGTCTAAAAGATGGGACCAAGGACCTGCACAGTACGCCAAGACAGTATCAGCAGAGAAGCAAAAACGAATGGTGAAGAAAGCCTTTCGCAAGTTGGAGAAGATCCAGAAAGGAGATACTTCAGAAGGCTCTGAGGAGATTAACAAGCTTATGCAGATGATCATCTCTCAGGATCAGACTATCCGGCAGCAGATCCACCAAATGCGTGAGCTAGATTTGGAGATTGAACATGCAGAGGAACAAATGAGCAGCCCAACACCTCGCTCAAGCATCACAGAAAGTGATGACGGACCGTCTCATTTTGACAACCATTTTCAGGAGTATTTATACACCAGCGATGGAATCGAGCAACTGGATCTACATGTTCGCATACACCAAGAACTCATTGACCAGCTCTCTCAAGATATAGACGTGGAGCTGAGGAGCTGGACTTCTGATTTGGAAGATTTTAAAGGTGCAGCTGCTGCTTGTCCAGAACTAGATGGAGAACCAAACCTCTCGTTGTCCTCAACAGATCTCTTTGAGCTGGAAAACTTACGCAAAGAACTTGAGACAAGCATGAGAGCTGGACTTTCCCTTCATTCCCAAATGCAGGATATTGAGAAGGAACTGCAGCGGAACAAAACATTCTTGCAGTCCCAGAACCAAGAATACCAGCATCTTGTTGCAGAACTTGGTGCACTTGAGGTGGGGGCCTGTCCAGACCAGCCAAACCCTGCATCTCTGAAGACCCAGATCAGGGCCACTGTCTCTGAGCAGGCAACAGGCAAGGTCAGACAGACTTGTTCACCTGCAGATGTGACGGATACAGACTCAGACACTGGAATAAGCTCAACTCACAGTCAGGACTCTTTGTCGCCTTGTGTGGACAGATCACCTCCTCTGGACACCGATGTTTGA

Function

symbol description
rassf9 Predicted to act upstream of or within endosomal transport and signal transduction. Orthologous to human RASSF9 (Ras association domain family member 9).

GO:

id name namespace
GO:0016197 endosomal transport biological_process
GO:0007165 signal transduction biological_process

KEGG: NA

ZFIN:

id description
ZDB-GENE-091204-470 Predicted to act upstream of or within endosomal transport and signal transduction. Orthologous to human RASSF9 (Ras association domain family member 9).

Ensembl:

ensembl_id ENSDARG00000074721

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00026349 False 1232 mRNA 0.48 1 16314591 16315822
TCONS_00026350 True 1278 mRNA 0.47 3 16314591 16320585

Neighbor

gene id symbol gene type direction distance location
XLOC_013327 NA coding downstream 6654 16224790 ~ 16307937 (-)
XLOC_013326 slc6a15 coding downstream 132639 16151774 ~ 16181952 (-)
XLOC_013325 sspn coding downstream 191369 16111185 ~ 16123222 (-)
XLOC_013324 NA coding downstream 296504 15991454 ~ 16018087 (-)
XLOC_013323 NA coding downstream 344018 15939261 ~ 15970573 (-)
XLOC_013329 NA coding upstream 51625 16372210 ~ 16377341 (-)
XLOC_013330 mgat4c coding upstream 67160 16387745 ~ 16590056 (-)
XLOC_013331 ampd3b coding upstream 442221 16762806 ~ 16795262 (-)
XLOC_013332 admb coding upstream 478269 16798854 ~ 16801033 (-)
XLOC_013333 swap70b coding upstream 556248 16876833 ~ 16916840 (-)
XLOC_013384 BX323829.1 misc upstream 3221517 19542102 ~ 19542231 (-)
XLOC_013321 CR854977.1 non-coding downstream 438811 15875662 ~ 15875780 (-)
XLOC_013319 BX928740.1 non-coding downstream 726390 15588087 ~ 15588201 (-)
XLOC_013345 NA non-coding upstream 1170736 17491321 ~ 17492706 (-)
XLOC_013349 NA non-coding upstream 1456942 17777527 ~ 17786790 (-)
XLOC_013351 NA non-coding upstream 1791409 18111994 ~ 18113888 (-)
XLOC_013355 BX470163.3 non-coding upstream 2248656 18569241 ~ 18569322 (-)

Expression


Co-expression Network