XLOC_013331 (ampd3b)


Basic Information

Item Value
gene id XLOC_013331
gene name ampd3b
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007129.7
NCBI id CM002902.2
chromosome length 51023478
location 16762806 ~ 16795262 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00026355
AATAACTATATCGTACATGCCTTTGAGGATGCAGAAACAGTGAACTGTTAGAAGTCTTCTTATGAATTTCCTTTTTCCTGTTTGTGaaaaccacacatacacacacgattGGTAGTTAGCATTCATCAGCTCACTGAGAGTTGAAACTTAACTGGACATCGTGTCTGCTGTGCTGTCAAAATGAGCAAAAAAGGAACCCCTCTGTCTAAGCAACAATCAACACCCAACTTTGGGAGGGAAATGCCGCGTCAGTTCACCAAGATCTCTCTCCACGATGTGGATGAGAATATTCGACTGATGGCGGAGAAAGTGTATGCTTCAGCTCTGAAGGAAGAGGACACTAAGAACACCTTCTCCATGTTCACCGTACCCGAGGACTGTCCCATTGGTTTGCAACAGGCTAAGGAGTGGGAGCTGCGCAAAGAGCTGGATGAGCAGAGGTCGGAGGAATCGGTCAAGAGGAAACAGAGTTTCAAGCTGATGCGGTCCCAGTCGATGTCCCTGCAAATCCCTGTGGCTCCAGACTGGGCCATGTCTGTAGTTTCAACCCTTTTGACCCCGTCTGCACCTGAAGGACAGATGCCTGTCAATATCCCAGAATTCCAGAGGGTCACCATCAGTGGGGATTACTGTGCAGGGATAACGGTTGAGGATTATGAGCAGGCAGCAAAATCTCTGTTGACAGCGCTTTTCATCAGAGAAAAATATTCCCGGCTGGCATATCACCGCTTCCCCAGGACCGCAGCCAAGTTTCTACGGAGTGCCAATAATGAAAAGTGGAGTGAGGATGAAGAAGTGCTGCCAGATATCTGTCCCTCCCCAAGTGAGGGTGAGGATCCCTACAGTATGGAAGACCTTCCACAGAATCTCAACTATTCCCTTAAGATGAAAGATGGAATCATATATGTCTATGATAACGAGGATGCATTAAAACAGGATCTGCCACGGAGCTTGCCATATCCTGACCTGGAAACCTTTGCTATCGATTTGAGCCACGTTCTTGCCATGATTGCAGACGGACCAACGAAGACTTATTGTCACAGACGGCTTAACTTCCTGACCTCCAAGTTCCAACTGCATGAAATGCTGAATGAGATGGCTGAGTTAAAGGAACTGAAGTGTGTTCCTCACAGAGATTTCTACAATGTCAGAAAggttgacacacacattcacgcagCAGCTTGCATGAACCAGAAGCATCTTCTGAAGTTCATCCAGGACAGCTATCAGACAGAAGCGGACCGAGTGGTGCTGGAGAAAGGTGGAAAGAAGTTCACCCTCAAACAGGTCTTTGAAAATCTCAAAATGGACCCTTATGACCTCACAGTGGACTCACTGGATGTGCATGCGGGCAGACAAACCTTTCATCGCTTTGATAAATTCAATTCCAAATACAACCCGGTTGGTGCAAATGAGCTCAGAGAGATCTACCTCAAAACCGATAACTATATCAACGGAGAGTATTTTGCACGTCTGATCAAGGAAGTTGCTCATGACCTAGAGGAGAGTAAATATCAGCACGCAGAACCTCGCCTCTCCATTTACGGACGAGCACCAGAGGAGTGGGAAAGTCTGTCCAAATGGTTCATCATGCAAAAGCTGCACTCCCCTAACATGAGGTGGATGATACAGGTGCCTAGGATCTATGACATTTTCAGATCAAAGAAGATTATTGCCAACTTCGCCAAGATGCTAGAGAACATCTTCCTCCCACTGTTTCAGGCCACTGTAAATCCTCAGAAACACAAAGAGATGCACGTCTTCCTCAAACACGTGACCGGGTTCGACAGTGTGGATGATGAATCCAAACACAGTGATCACATATTCAACTATAAGAGTCCAAAACCTGAAGAGTGGACCTCCGAGGAAAACCCACCCTACACATACTACCTCTTCCACATGTATGCCAACATCATGGTTCTCAATAACCTAAGAAAGGAGCGTGGTCTCAATACCTTTCTGTTTCGTCCTCACTGTGGTGAAGCAGGATCCATTACTCATCTGGTGTCCGCTTTCCTCACAGCCGACAACATCTCTCACGGACTCAACCTCAAGAAGAGTCCTGTGCTGCAGTACCTGTATTACTTGGCCCAGGTTCCCATTGCCATGTCTCCTCTCAGCAACAACAGCCTGTTCCTGGAGTACTCCAAAAATCCCCTGCGAGAGTTCCTGCAGAAAGGCCTGTGTGTGTCCCTCTCCACGGATGACCCGCTACAGTTCCACTACACAAAGGAGGCTTTGATGGAAGAATACGCCATAGCAGCACAGCTGTGGAAACTGAGCACATGCGATACATGCGAAATTGCCAGAAACAGTGTGCTTCAGAGTGGCCTGTCTCATCAGGAGAAGAAATACTTCCTGGGTGAGAAATATCTAGATGATGGACCAGAAGGAAATGACATCCGTAAGACGAATGTGGCGCAGATCCGTATGGCCTATCGGCATGAGACACTGTGCAATGAGCTCAGCTTCCTAGTGGAAGCCGTCAAGTCAGAAGCATTGGCAGCACAAGCCCCGTAAACGTGACAGGGTGACAGAGACGGTAAAGCGTGGGTTCATGTGAGTGGACCAGATGTCAGCATAAAATCTTGCGACAGGTCATGCACTAAAGAGTTATGAAAAAAACACATCATTCTAGGATGCAAGATAGAGAGCCATACATCCTATTGATGATGCACATTTCACTTCCCATGGTGCCTTAAAGGTGTTGGATATAAACATTTCATATcgcaaatctgtttttttttttttttttttaaacgaacaATAAACTGTTCCTGTATTTTGCATGCTTTCTGAAAA
>TCONS_00026356
ATGCTTTAAATAGGGCATCAGCAAGACTGGAAAACACTGTAGCCCTATAGACAAACAAGACATAGAGCTGAAGAGCACAGTTGTAAAGCAACAGGGACATAGAGAGTGCAAATCCACAAAAGCTATGGCACAAATTACTACTGAAGAAATGCCGCGTCAGTTCACCAAGATCTCTCTCCACGATGTGGATGAGAATATTCGACTGATGGCGGAGAAAGTGTATGCTTCAGCTCTGAAGGAAGAGGACACTAAGAACACCTTCTCCATGTTCACCGTACCCGAGGACTGTCCCATTGGTTTGCAACAGGCTAAGGAGTGGGAGCTGCGCAAAGAGCTGGATGAGCAGAGGTCGGAGGAATCGGTCAAGAGGAAACAGAGTTTCAAGCTGATGCGGTCCCAGTCGATGTCCCTGCAAATCCCTGTGGCTCCAGACTGGGCCATGTCTGTAGTTTCAACCCTTTTGACCCCGTCTGCACCTGAAGGACAGATGCCTGTCAATATCCCAGAATTCCAGAGGGTCACCATCAGTGGGGATTACTGTGCAGGGATAACGGTTGAGGATTATGAGCAGGCAGCAAAATCTCTGTTGACAGCGCTTTTCATCAGAGAAAAATATTCCCGGCTGGCATATCACCGCTTCCCCAGGACCGCAGCCAAGTTTCTACGGAGTGCCAATAATGAAAAGTGGAGTGAGGATGAAGAAGTGCTGCCAG
>TCONS_00026357
CTGTTTCCAAACAAATAAGGAAAGGTCGGAAAAGACACTGGATTTAAAAGGAGCAAATAAACATAACCTTCCAGTCTGTCACACCCAGTACTCTCTGGAACGCTGAGGTTGCCAGACCTTCAAAAAAACACAGAAATGCCGCGTCAGTTCACCAAGATCTCTCTCCACGATGTGGATGAGAATATTCGACTGATGGCGGAGAAAGTGTATGCTTCAGCTCTGAAGGAAGAGGACACTAAGAACACCTTCTCCATGTTCACCGTACCCGAGGACTGTCCCATTGGTTTGCAACAGGCTAAGGAGTGGGAGCTGCGCAAAGAGCTGGATGAGCAGAGGTCGGAGGAATCGGTCAAGAGGAAACAGAGTTTCAAGCTGATGCGGTCCCAGTCGATGTCCCTGCAAATCCCTGTGGCTCCAGACTGGGCCATGTCTGTAGTTTCAACCCTTTTGACCCCGTCTGCACCTGAAGGACAGATGCCTGTCAATATCCCAGAATTCCAGAGGGTCACCATCAGTGGGGATTACTGTGCAGGGATAACGGTTGAGGATTATGAGCAGGCAGCAAAATCTCTGTTGACAGCGCTTTTCATCAGAGAAAAATATTCCCGGCTGGCATATCACCGCTTCCCCAGGACCGCAGCCAAGTTTCTACGGAGTGCCAATAATGAAAAGTGGAGTGAGGATGAAGAAGTGCTGCCAG

Function

symbol description
ampd3b Predicted to enable AMP deaminase activity. Predicted to be involved in AMP metabolic process and IMP biosynthetic process. Predicted to act upstream of or within IMP salvage. Predicted to be active in cytosol. Is expressed in several structures, including epidermis; hematopoietic system; periderm; peripheral olfactory organ; and ventral mesoderm. Orthologous to human AMPD3 (adenosine monophosphate deaminase 3).

GO:

id name namespace
GO:0046033 AMP metabolic process biological_process
GO:0006188 IMP biosynthetic process biological_process
GO:0009168 purine ribonucleoside monophosphate biosynthetic process biological_process
GO:0032264 IMP salvage biological_process
GO:0005829 cytosol cellular_component
GO:0003876 AMP deaminase activity molecular_function
GO:0019239 deaminase activity molecular_function
GO:0046872 metal ion binding molecular_function
GO:0016787 hydrolase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-5929 Predicted to enable AMP deaminase activity. Predicted to be involved in AMP metabolic process and IMP biosynthetic process. Predicted to act upstream of or within IMP salvage. Predicted to be active in cytosol. Is expressed in several structures, including epidermis; hematopoietic system; periderm; peripheral olfactory organ; and ventral mesoderm. Orthologous to human AMPD3 (adenosine monophosphate deaminase 3).

Ensembl:

ensembl_id ENSDARG00000032469

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00026355 False 2802 mRNA 0.46 16 16762806 16795262
TCONS_00026356 False 713 mRNA 0.49 4 16780508 16791331
TCONS_00026357 True 700 mRNA 0.49 4 16780508 16792561

Neighbor

gene id symbol gene type direction distance location
XLOC_013330 mgat4c coding downstream 172750 16387745 ~ 16590056 (-)
XLOC_013329 NA coding downstream 385465 16372210 ~ 16377341 (-)
XLOC_013328 rassf9 coding downstream 442221 16314591 ~ 16320585 (-)
XLOC_013327 NA coding downstream 454869 16224790 ~ 16307937 (-)
XLOC_013326 slc6a15 coding downstream 580854 16151774 ~ 16181952 (-)
XLOC_013332 admb coding upstream 3592 16798854 ~ 16801033 (-)
XLOC_013333 swap70b coding upstream 81571 16876833 ~ 16916840 (-)
XLOC_013334 wee1 coding upstream 123164 16918426 ~ 16924221 (-)
XLOC_013335 znf143b coding upstream 129603 16924865 ~ 16937109 (-)
XLOC_013336 akip1 coding upstream 155462 16950724 ~ 16953978 (-)
XLOC_013384 BX323829.1 misc upstream 2746840 19542102 ~ 19542231 (-)
XLOC_013324 NA non-coding downstream 744719 15991454 ~ 16018087 (-)
XLOC_013323 NA non-coding downstream 792233 15939261 ~ 15970573 (-)
XLOC_013321 CR854977.1 non-coding downstream 887026 15875662 ~ 15875780 (-)
XLOC_013345 NA non-coding upstream 696059 17491321 ~ 17492706 (-)
XLOC_013349 NA non-coding upstream 982265 17777527 ~ 17786790 (-)
XLOC_013351 NA non-coding upstream 1316732 18111994 ~ 18113888 (-)
XLOC_013355 BX470163.3 non-coding upstream 1773979 18569241 ~ 18569322 (-)
XLOC_013356 BX470163.2 non-coding upstream 1782212 18577474 ~ 18577549 (-)

Expression


Co-expression Network