XLOC_013333 (swap70b)


Basic Information

Item Value
gene id XLOC_013333
gene name swap70b
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007129.7
NCBI id CM002902.2
chromosome length 51023478
location 16876833 ~ 16916840 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00026359
CAAGTGCGACGCCAGTCAGCAGACGGAGAAACTACCTCTGAAAATGGGACTAAGGGACGAGCTTCTCAAGGCAATCTGGCATGCCTTCACAGCCCTGGATGTGGATAAAAGTGGGAAAGTGTCAAAATCTCAGCTGAAGGTGCTTTCCCATAACCTGTGCACAGTGATGAAGATCCCTCATGATCCTGTAGCTCTAGAGGAACActttagagatgatgatgaaggtcCGGTTTCCAATCAGGGATACATGCCCTACCTGAACAGGTTCATTCTGGACAAGgtTCAGGACAACTTTGACCGGATTGATTTTAACAGGATGTGCTGGACTCTGTGTGCCAGAAAAAACCTCAACAGAAACCACCTGCTTATCTCAGATGACGATGCCTTTAAGATCTGGTGTATTTTCAACTTCCTGTCTGAGGATAAATATCCACTGGTCATGGTCTCAGAGGAGATAGAGTACTTCCTTCGTAAACTAACAGAAGCCATGGGCGGCAGCTGGATTGAGGAGAAGTTCGAACAGTACAAGCTCCAGCTGAGCAGCAAGCACCAGTGCCTGAAAGTGTGGGAGCTGATCGAGCTGGTGGGAATGGGTCACTTCAGTAAAGGCATGGACCGCCAGACTCTCTCCATGGGCATCACTGAAGTGTTCCACGAGCTGATTCTGGATGTGCTCAAACAGGGTTACATGATGAAAAAGGGACACAAAAGAAAGAACTGGACTGAACGGTGGTTCCTCTTGAAGCCCAGCTTAATTTCATACTATGTCAGTGAAGACCTTACAGAGAAGAAAGGAGACATACTACTAGATGGAAACTGCTGTGTTGAGTCGTTACCTGATAAGGAGGGCAAAAAGTGCCTTTTCTACGTCAAGTGCTCTGACAAAAGCTTTGAAATCAGCGCCTCCGATAAGAAGAAAAAACAAGAGTGGATTCAAGCTATTCAGACCTGCATTACACTCTTGAAGGTGGGACGTCCAGCTCCGCACCATGAGGCCAGGCAGAAGCGGCGAGAGTTACGACAAAAACAACAGGCTGAGCAGGAAGAACTGGAGCTGAGAATGAGAGAGCTGCAGATGGCCAACGAGAACAAACAGAGGGAGCTGGAGGCCATGAGGAAGAAACTGGAGGAGGCAGCAGCCAATGCAGCAGACGAGGAACGCAGACGTCTGCAGACCCAGAACGAGCTGCAGGATCTGTATCGGCTGGAAATGGAGAAAGAGAAAATGGTACGACAGCAAATGGAGGAACAGGTGGCTCAGAAGTCCAATGAGCTAGAGCAGTATCTGCAGCGCGTCCGTGAACTGGAGAACATGTACCACAGCTTAGAAGAAGCACTGGAGGAGGAAAGACAGGCCAGACAGGATGAGGAAACTGTCCGAAAACTACAGGCCAGGCTGCTGGAGGAGGAAGTGTCCAAGCGTGCAGAGCTGGAGGAGATTCACCTCTATCAGCAGCAGACCATTTCTCAGACACAGGCAGAGAAGCAGGAGCTGGAGCGAGAGCGTCTGGCCAAGGAGAGCGCTTTAGAGTCCGCCATGCAGCAGCTGCATCAGCTGGAGGCAGACAGACAGGGAGCTCTGGAGCAATATCAGGAGGTCATGAAGAAACTATCAGATGCTGCCAATAATACAAAGAGCTGGAAGGACAAAGTGGCTCAGCATGAAGGACTCATAAGACTCATTCAGCCAGGTCCTAAATACCCTCAGAAAATCACAAACTGGGGACCTGCAGCATTTACAGACGCAGAACTCAACCTGAGAGAGAAGGACTGGCAGGAGAAGAAAAACAGGCCTGCTACACCGCAGTAGTGCTCTTACAGTGCTGTTTATGCGGTGTTACTGTAGACAGTCACTAGTGAAGTATATTTACTGCCTCTGTGGGGTTAGTCAGTCTCTGACCACACTAAAACTGTAGGCCACTGAACTTTACACAAGTTCAGTCTGGTCTCATCGCTCCTGTCTCTACCGTAACATTCAGTGTCATTTTAGCCTCTGCTTTTAAACGTTTTATACAATTTGTTTGTATGATGATCTACATCTTGTGAATGTGTTCATTTCGGTGCATTTCCACCAAAGTAAAGGCAGATGTTTCTTCCCTGTAGTTCATGAGTTtagtttatgttttcatttttataaaagtGAAATAATGGAAATAACTTCTCTGAccaagtaacatttaaaaaacacacttatCATTTTACACTGTGCAGTCATTTCTAATTTAGCTTTTCAGAAATGTCAGTTTTACATTTGAAATTGTCACTCGGCATGCAAAATTAAACTAATGAACTAACTGTTCTACTTTACTAGAACAGTTGACGTAGCAGAAATGTATGAAAgtgtttactacactgtaaagGCAGTCTCATTGAAGAAGACATGATTGCAGTATTAACTAATTTATACTCTCAAGTTATTAACAAAACTGAATTTTTGGGATTGTTCTTTCAGTCGTGTATATTTCTGTACCAAACTGATGCGTTTGCTTTCAAACTAATGTCCCGATTTAGGACCTGAGACTGTACTGTTTATCATTCAATAAAAAGGGATTATTTAA
>TCONS_00026360
GAACTGGAGAACATGTACCACAGCTTAGAAGAAGCACTGGAGGAGGAAAGACAGGCCAGACAGGATGAGGAAACTGTCCGAAAACTACAGGCCAGGCTGCTGGAGGAGGAAGTGTCCAAGCGTGCAGAGCTGGAGGAGATTCACCTCTATCAGCAGCAGACCATTTCTCAGACACAGGCAGAGAAGCAGGAGCTGGAGCGAGAGCGTCTGGCCAAGGAGAGCGCTTTAGAGTCCGCCATGCAGCAGCTGCATCAGCTGGAGGCAGACAGACAGGGAGCTCTGGAGCAATATCAGGAGGTCATGAAGAAACTATCAGATGCTGCCAATAATACAAAGAGCTGGAAGGACAAAGTGGCTCAGCATGAAGGACTCATAAGACTCATTCAGCCAGGTGATGATCTTTTCTCAGTATTCAGATCATGGTGTCACTTGTGCACAATAAAAAAGCAGTTTCTCATTTCCTAAACAcgttgcaaatgcttttgtacatGCATGCAAATGAATATGTACAATCCTCTGATGTTTTCTGCATTATAAATTGgttaaaatgta
>TCONS_00026361
gcagaCATTTTGGGAGATTTTGTTGCCATCCCGTATTTTTGcttcccaatgttgacaggtTCAGGACAACTTTGACCGGATTGATTTTAACAGGATGTGCTGGACTCTGTGTGCCAGAAAAAACCTCAACAGAAACCACCTGCTTATCTCAGATGACGATGCCTTTAAGATCTGGTGTATTTTCAACTTCCTGTCTGAGGATAAATATCCACTGGTCATGGTCTCAGAGGAGATAGAGTACTTCCTTCGTAAACTAACAGAAGCCATGGGCGGCAGCTGGATTGAGGAGAAGTTCGAACAGTACAAGCTCCAGCTGAGCAGCAAGCACCAGTGCCTGAAAGTGTGGGAGCTGATCGAGCTGGTGGGAATGGGTCACTTCAGTAAAGGCATGGACCGCCAGACTCTCTCCATGGGCATCACTGAAGTGTTCCACGAGCTGATTCTGGATGTGCTCAAACAGGGTTACATGATGAAAAAGGGACACAAAAGAAAGAACTGGACTGAACGGTGGTTCCTCTTGAAGCCCAGCTTAATTTCATACTATGTCAGTGAAGACCTTACAGAGAAGAAAGGAGACATACTACTAGATGGAAACTGCTGTGTTGAGTCGTTACCTGATAAGGAGGGCAAAAAGTGCCTTTTCTACGTCAAGTGCTCTGACAAAAGCTTT

Function

symbol description
swap70b Predicted to enable calcium ion binding activity. Acts upstream of or within convergent extension; positive regulation of oligodendrocyte differentiation; and regulation of exit from mitosis. Predicted to be active in cytoplasm and nucleus. Is expressed in several structures, including immature eye; mesoderm; nervous system; pectoral fin; and vasculature. Orthologous to human SWAP70 (switching B cell complex subunit SWAP70).

GO:

id name namespace
GO:0007096 regulation of exit from mitosis biological_process
GO:0060026 convergent extension biological_process
GO:0060027 convergent extension involved in gastrulation biological_process
GO:0060028 convergent extension involved in axis elongation biological_process
GO:0048714 positive regulation of oligodendrocyte differentiation biological_process
GO:0005634 nucleus cellular_component
GO:0005737 cytoplasm cellular_component
GO:0005509 calcium ion binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-3587 Predicted to enable calcium ion binding activity. Acts upstream of or within convergent extension; positive regulation of oligodendrocyte differentiation; and regulation of exit from mitosis. Predicted to be active in cytoplasm and nucleus. Is expressed in several structures, including immature eye; mesoderm; nervous system; pectoral fin; and vasculature. Orthologous to human SWAP70 (switching B cell complex subunit SWAP70).

Ensembl:

ensembl_id ENSDARG00000057286

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00026359 False 2558 mRNA 0.45 12 16876833 16916840
TCONS_00026360 False 552 mRNA 0.47 3 16879692 16885362
TCONS_00026361 True 670 mRNA 0.46 5 16896118 16907436

Neighbor

gene id symbol gene type direction distance location
XLOC_013332 admb coding downstream 75800 16798854 ~ 16801033 (-)
XLOC_013331 ampd3b coding downstream 81571 16762806 ~ 16795262 (-)
XLOC_013330 mgat4c coding downstream 286777 16387745 ~ 16590056 (-)
XLOC_013329 NA coding downstream 499492 16372210 ~ 16377341 (-)
XLOC_013328 rassf9 coding downstream 556248 16314591 ~ 16320585 (-)
XLOC_013334 wee1 coding upstream 1586 16918426 ~ 16924221 (-)
XLOC_013335 znf143b coding upstream 8025 16924865 ~ 16937109 (-)
XLOC_013336 akip1 coding upstream 33884 16950724 ~ 16953978 (-)
XLOC_013337 tph2 coding upstream 72924 16989764 ~ 17001056 (-)
XLOC_013338 tbc1d15 coding upstream 85324 17002164 ~ 17020231 (-)
XLOC_013384 BX323829.1 misc upstream 2625262 19542102 ~ 19542231 (-)
XLOC_013327 NA non-coding downstream 568896 16224790 ~ 16307937 (-)
XLOC_013324 NA non-coding downstream 858746 15991454 ~ 16018087 (-)
XLOC_013323 NA non-coding downstream 906260 15939261 ~ 15970573 (-)
XLOC_013321 CR854977.1 non-coding downstream 1001053 15875662 ~ 15875780 (-)
XLOC_013345 NA non-coding upstream 574481 17491321 ~ 17492706 (-)
XLOC_013349 NA non-coding upstream 860687 17777527 ~ 17786790 (-)
XLOC_013351 NA non-coding upstream 1195154 18111994 ~ 18113888 (-)
XLOC_013355 BX470163.3 non-coding upstream 1652401 18569241 ~ 18569322 (-)
XLOC_013356 BX470163.2 non-coding upstream 1660634 18577474 ~ 18577549 (-)

Expression


Co-expression Network