XLOC_013335 (znf143b)


Basic Information

Item Value
gene id XLOC_013335
gene name znf143b
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007129.7
NCBI id CM002902.2
chromosome length 51023478
location 16924865 ~ 16937109 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00026364
GCATAGCGTTTCCTGCCCTGGTGCATGGTGGTCGAACGAAGGGATTGTTGGAAAATTTTCGGAGGCAGATCATGCTGTTAGCCCAGGTGAATCGGGACACCCAGGGCATGGAGTTTCAGAGTGTGGACGGGGACCCACAGCAGGTCACCCTTTGCCTGACAGAGGCAGTAACAGTTGCAGATGACAATATTGATGGAATGGACACCGTGAGCCTGCAGGCAGTGACTCTGGTGGATGGATCCACAGCATACATCCAACATAGCCCTAAAGTTTCTCTCACAGAAAACAAAATAATGGAGGGACAAGTGATTCAGCTGGAGGATGGATCTGCTGCTTATGTCCAGCACCTGCCAATGTCTAAAACGGGTGGAGAAGGTTTGAGGCTAGAAGATGGGCAAGCTGTGCAACTAGAGGATGGAACGACTGCTTACATTCACGCACCCAAAGAAACATATGATCAGGGCGGATTACAGGCTGTTCAGTTGGAGGATGGCACCACTGCATATATTCAACATATGCCTCAGTCCAACACCATCTTGGCCATCCAGGCTGATGGTACTGTAGCAGACTTACAAACAGAGGGCACGATTGATGCCGAGACGATTAGTGTACTGGAGCAATACTCTACTAAGATGGAGGCCACAGAGTGTGGCACAGGGTTAATTGGTCGAGGGGACTCTGATGGTGTCCATATGCAGATTGTACTGCAGGGTCAAGACTGTCGTTCACCTAGAATCCAGCATGTTGGAGAAAAGGCCTTCCGATGTGAACATGAAGGGTGTGGAAAACTCTACACTACAGCTCACCATCTGAAGGTTCATGAAAGATCACATACTGGAGATAAGCCCTACATTTGTGATCATTTGGGTTGTGGCAAAAAGTTTGCAACAGGATATGGTCTCAAGAGTCATGTCCgaacacacactggagagaaaccgtaccgCTGTCAAGAGCTCAACTGCCTTAAGTCTTTCAAAACTTCTGGAGATTTACAAAAACACACAAGAACACATACAGGTGAAAAACCCTTTAAATGTCCGTTTGAAGGCTGTGGGAGATCTTTCACCACATCCAACATTCGTAAAGTCCACATCCGAACTCACACAGGCGAAAGGCCATATTACTGTGCCGAACCCAACTGCGGAAGGGCCTTTGCAAGTGCCACCAATTACAaaaaccacatgaggatccacacagGTGAAAAGCCATATGTCTGCACAGTTCCTGGGTGTGACAAACGTTTCACAGAGTACTCCAGTCTATACAAGCACCATGTGGTTCATACGCCCTGCAAACCCTACAACTGTAATCACTGTGGAAAGACGTATAAGCAGATTTCAACCTTAGCCATGCATAAACGCACCGCACACAATGACACCGAGCCTATAGAAGAGGAGCAAGAAGGTTATTTTGAGCCTCCTGCAGAGGCCATTGATGACCCTGGGTTAATGTATACTCCAAGTGTGGTGGATGACGACTCTGGATCTGAGCAAGTGTCAGGATCTGAGATCATGGGACAACATCATGTGGCTCTCATATCCCAGGATGGCACGCAACAGgTTCTGTCTCAAGCAGATATGCAGGCTATGGGAGGCACGATTACAATGGTAACACAAGAGGGGACCACCATAACAATCCCAGCCCATGAAGCAATGCTTTCCTCAGGGGGAGCACATTCAGTTACTATGGTATCTGCAGACGGCACTGAGGGACAAgtgGCCATCGTAACGCCGGATCTGGCAGCTTACCAGACAGAAGAGGGGGAGCTGATCCAGGATCAGGAACAACATGAAGTTTCCACAAGCCCACACCCGGTCACTCTGCTGGCTACCTCTAACGGCACACACATAGCTGTGCAGCTAAGTGATCATCCGTCCCTAGAAGAAGCCATCAGAATAGCATCAAGAATACAACAAGGAGAAACTCCCGGCATGGACGATTAACTCATGTTGTATAACTTATCAATGAACTAAAGGTCTCaaggatttgtgtgtgtgtaagtctgagtgttgtaaaaatatttttttctaatgctgGCATCATGATCGctatatatcaaatatatttttgtgtggatATGTACATAGCTGTTTTAAAAGTAGAGTTTTCTGTATATATTTGATTATGCTATTTTTGCAAGCTGTTAAAAAAGgtctatgataataataataaaaagacaaaatctatttttaaa
>TCONS_00026365
TTTCCTCAGACGCCGCTTAGCCGGAAAGCGTGGCGATGGGAGAGCGGTGGAATTCGATGTGGAATGCAGAACGAAATAAACTCGTGAAAATGCATCGGAAgcggtgttttatttattaaaggcaGTTGGACGCAGGGTTGTAATCGGTTGCAACAATTGTAACGATCCGATTGTGATTGTCAAGTTACTGCCGCAGCGAATTCGCTGCGGGCTAATGGTCGTCCCATTCTGTTTTAAACAGCTTTATTTAAGACGGAAACGTTTTGTTTAAGTTTGTGTGATTGCATAAGTTTATGAATCCCAACGAGAGTATATTATGTAAACGAGAGGAAACGTCAAGAGTAAAACGCGAGCATTATTGTAGCATATTTGCTAACATGTGATGATGGGTTAGCATGACAGATGTCCTGTCAACTAATAAAGCTAAGAACTGACGAACAACTTTACATCAGCTGCTTTTTGcgatttaatttttgtaattgtgcaattatttttatattcCCAAGTTGTGTTCTTTAAATATGTTTCCGCTATTTGGCTAAAATGGACATCAGAAATGCCCGCTCTAATGCGGTAGTTCGTGTATATTTGGCAGATCATGCTGTTAGCCCAGGTGAATCGGGACACCCAGGGCATGGAGTTTCAGAGTGTGGACGGGGACCCACAGCAGGTCACCCTTTGCCTGACAGAGGCAGTAACAGTTGCAGATGACAATATTGATGGAATGGACACCGTGAGCCTGCAGGCAGTGACTCTGGTGGATGGATCCACAGCATACATCCAACATAGCCCTAAAGTTTCTCTCACAGAAAACAAAATAATGGAGGGACAAGTGATTCAGCTGGAGGATGGATCTGCTGCTTATGTCCAGCACCTGCCAATGTCTAAAACGGGTGGAGAAGGTTTGAGGCTAGAAGATGGGCAAGCTGTGCAACTAGAGGATGGAACGACTGCTTACATTCACGCACCCAAAGAAACATATGATCAGGGCGGATTACAGGCTGTTCAGTTGGAGGATGGCACCACTGCATATATTCAACATATGCCTCAGTCCAACACCATCTTGGCCATCCAGGCTGATGGTACTGTAGCAGACTTACAAACAGAGGGCACGATTGATGCCGAGACGATTAGTGTACTGGAGCAATACTCTACTAAGATGGAGGCCACAGAGTGTGGCACAGGGTTAATTGGTCGAGGGGACTCTGATGGTGTCCATATGCAGATTGTACTGCAGGGTCAAGACTGTCGTTCACCTAGAATCCAGCATGTTGGAGAAAAGGCCTTCCGATGTGAACATGAAGGGTGTGGAAAACTCTACACTACAGCTCACCATCTGAAGGTTCATGAAAGATCACATACTGGAGATAAGCCCTACATTTGTGATCATTTGGGTTGTGGCAAAAAGTTTGCAACAGGATATGGTCTCAAGAGTCATGTCCgaacacacactggagagaaaccgtaccgCTGTCAAGAGCTCAACTGCCTTAAGTCTTTCAAAACTTCTGGAGATTTACAAAAACACACAAGAACACATACAGGTGAAAAACCCTTTAAATGTCCGTTTGAAGGCTGTGGGAGATCTTTCACCACATCCAACATTCGTAAAGTCCACATCCGAACTCACACAGGCGAAAGGCCATATTACTGTGCCGAACCCAACTGCGGAAGGGCCTTTGCAAGTGCCACCAATTACAaaaaccacatgaggatccacacagGTGAAAAGCCATATGTCTGCACAGTTCCTGGGTGTGACAAACGTTTCACAGAGTACTCCAGTCTATACAAGCACCATGTGGTTCATACGCCCTGCAAACCCTACAACTGTAATCACTGTGGAAAGACGTATAAGCAGATTTCAACCTTAGCCATGCATAAACGCACCGCACACAATGACACCGAGCCTATAGAAGAGGAGCAAGAAGGTTATTTTGAGCCTCCTGCAGAGGCCATTGATGACCCTGGGTTAATGTATACTCCAAGTGTGGTGGATGACGACTCTGGATCTGAGCAAGTGTCAGGATCTGAGATCATGGGACAACATCATGTGGCTCTCATATCCCAGGATGGCACGCAACAGgTTCTGTCTCAAGCAGATATGCAGGCTATGGGAGGCACGATTACAATGGTAACACAAGAGGGGACCACCATAACAATCCCAGCCCATGAAGCAATGCTTTCCTCAGGGGGAGCACATTCAGTTACTATGGTATCTGCAGACGGCACTGAGGGACAAgtgGCCATCGTAACGCCGGATCTGGCAGCTTACCAGACAGAAGAGGGGGAGCTGATCCAGGATCAGGAACAACATGAAGTTTCCACAAGCCCACACCCGGTCACTCTGCTGGCTACCTCTAACGGCACACACATAGCTGTGCAGCTAAGTGATCATCCGTCCCTAGAAGAAGCCATCAGAATAGCATCAAGAATACAACAAGGAGAAACTCCCGGCATGGACGATTAACTCATGTTGTATAACTTATCAATGAACTAAAGGTCTCaaggatttgtgtgtgtgtaagtctgagtgttgtaaaaatatttttttctaatgctgGCATCATGATCGctatatatcaaatatatttttgtgtggatATGTACATAGCTGTTTTAAAAGTAGAGTTTTCTGTATATATTTGATTATGCTATTTTTGCAAGCTGTTAAAAAAGgtctatgataataataataaaaagacaaaatctattttt

Function

symbol description
znf143b Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Acts upstream of or within brain development and positive regulation of transcription, DNA-templated. Predicted to be active in nucleus. Is expressed in forebrain; hindbrain; and midbrain. Orthologous to human ZNF143 (zinc finger protein 143).

GO:

id name namespace
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0045893 positive regulation of transcription, DNA-templated biological_process
GO:0007417 central nervous system development biological_process
GO:0005634 nucleus cellular_component
GO:0046872 metal ion binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0000978 RNA polymerase II cis-regulatory region sequence-specific DNA binding molecular_function
GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040426-1586 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Acts upstream of or within brain development and positive regulation of transcription, DNA-templated. Predicted to be active in nucleus. Is expressed in forebrain; hindbrain; and midbrain. Orthologous to human ZNF143 (zinc finger protein 143).

Ensembl:

ensembl_id ENSDARG00000041581

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00026364 False 2194 mRNA 0.46 16 16924865 16937109
TCONS_00026365 True 2718 mRNA 0.45 16 16924868 16937008

Neighbor

gene id symbol gene type direction distance location
XLOC_013334 wee1 coding downstream 644 16918426 ~ 16924221 (-)
XLOC_013333 swap70b coding downstream 8025 16876833 ~ 16916840 (-)
XLOC_013332 admb coding downstream 123832 16798854 ~ 16801033 (-)
XLOC_013331 ampd3b coding downstream 129603 16762806 ~ 16795262 (-)
XLOC_013330 mgat4c coding downstream 334809 16387745 ~ 16590056 (-)
XLOC_013336 akip1 coding upstream 13615 16950724 ~ 16953978 (-)
XLOC_013337 tph2 coding upstream 52655 16989764 ~ 17001056 (-)
XLOC_013338 tbc1d15 coding upstream 65055 17002164 ~ 17020231 (-)
XLOC_013339 has3 coding upstream 90765 17027874 ~ 17030870 (-)
XLOC_013340 tango6 coding upstream 95203 17032312 ~ 17075098 (-)
XLOC_013384 BX323829.1 misc upstream 2604993 19542102 ~ 19542231 (-)
XLOC_013329 NA non-coding downstream 547524 16372210 ~ 16377341 (-)
XLOC_013327 NA non-coding downstream 616928 16224790 ~ 16307937 (-)
XLOC_013324 NA non-coding downstream 906778 15991454 ~ 16018087 (-)
XLOC_013323 NA non-coding downstream 954292 15939261 ~ 15970573 (-)
XLOC_013321 CR854977.1 non-coding downstream 1049085 15875662 ~ 15875780 (-)
XLOC_013345 NA non-coding upstream 554212 17491321 ~ 17492706 (-)
XLOC_013349 NA non-coding upstream 840418 17777527 ~ 17786790 (-)
XLOC_013351 NA non-coding upstream 1174885 18111994 ~ 18113888 (-)
XLOC_013355 BX470163.3 non-coding upstream 1632132 18569241 ~ 18569322 (-)
XLOC_013356 BX470163.2 non-coding upstream 1640365 18577474 ~ 18577549 (-)

Expression


Co-expression Network