XLOC_013336 (akip1)


Basic Information

Item Value
gene id XLOC_013336
gene name akip1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007129.7
NCBI id CM002902.2
chromosome length 51023478
location 16950724 ~ 16953978 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00026366
TGCTTTTCAACTTTCACTTCAGCGCCACACGCCCATCATCACTCAATACAGCGGCAACAGTTCGAGATTCAGTGAACTAAACACGTTCAAAAAGGAAACCGCGAACATTTTAGGCGTCATTTCATTGTTTAATCCCGAACAGTTGTGTTCATGGCCAGTCAAACCTGGTTGGAGTCTTCTCTGCGCCGGTCATATGAACTCGGCCAGGAGGTGTTGGAGAAAGCAAAGAGAAGGTCTGTTAGCAGCTCAAGTACAAAATCTAGACCAACTCTCGGGTTCTGTCACAAGGAAAGGGGCTCAGAGGGAGATACCTGCCATTCAAACTTGAACCATGCTTTTGCAACAATAGTGGAGTACATGTCAGAAACTACCAGACAATGCAAGAAATATTACACATCTGTGCACCGGACTCAGCCCAGTGAGCAAGAGCACATCTGTCGTTATCATTCCCAGCAGACCTTGAAGACTGCAGACCAGAAGCACAATGCTACGGCTGCCACTAAACAATATGCAGGTTTGTCAGAAGCAGAGGATTTCCTCATTGAAGTGTCTCCGGGAACCTATTCTATCACAGCAGCAATGCAGGACACAAGACCACAGACCAAAACTGTCCATGTCGATGCAGGAGAGAGCATGAGCCTTGCATTTAACCTCTGAACTTCAGCTCTATTTTAAATGGCCTTCACTGAGGACTTGCAGTAAAATTCTAAACGCACTGATTCTGACTTTCGTAAGTATTCATCAATTGTATTGTTTGATGCTCAGGAATATGTATTCATCTATTTTTATAGTAATCGTGGATTTAATTAGCCACAATGAGATTTAGCAGCAAGACATTTGCCCTTAATTTCACTTTATTCCCTGATGTTGGTGATTAATAAACTTCTGTGTAATTTTA

Function

symbol description
akip1 Predicted to act upstream of or within regulation of NIK/NF-kappaB signaling. Predicted to be active in nucleoplasm. Is expressed in brain; digestive system; heart tube; and pectoral fin musculature. Orthologous to human AKIP1 (A-kinase interacting protein 1).

GO:

id name namespace
GO:1901222 regulation of NIK/NF-kappaB signaling biological_process
GO:0005654 nucleoplasm cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-030829-24 Predicted to act upstream of or within regulation of NIK/NF-kappaB signaling. Predicted to be active in nucleoplasm. Is expressed in brain; digestive system; heart tube; and pectoral fin musculature. Orthologous to human AKIP1 (A-kinase interacting protein 1).

Ensembl:

ensembl_id ENSDARG00000069037

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00026366 True 898 mRNA 0.43 5 16950724 16953978

Neighbor

gene id symbol gene type direction distance location
XLOC_013335 znf143b coding downstream 13615 16924865 ~ 16937109 (-)
XLOC_013334 wee1 coding downstream 26503 16918426 ~ 16924221 (-)
XLOC_013333 swap70b coding downstream 33884 16876833 ~ 16916840 (-)
XLOC_013332 admb coding downstream 149691 16798854 ~ 16801033 (-)
XLOC_013331 ampd3b coding downstream 155462 16762806 ~ 16795262 (-)
XLOC_013337 tph2 coding upstream 35786 16989764 ~ 17001056 (-)
XLOC_013338 tbc1d15 coding upstream 48186 17002164 ~ 17020231 (-)
XLOC_013339 has3 coding upstream 73896 17027874 ~ 17030870 (-)
XLOC_013340 tango6 coding upstream 78334 17032312 ~ 17075098 (-)
XLOC_013341 il17c coding upstream 122007 17075985 ~ 17147803 (-)
XLOC_013384 BX323829.1 misc upstream 2588124 19542102 ~ 19542231 (-)
XLOC_013329 NA non-coding downstream 573383 16372210 ~ 16377341 (-)
XLOC_013327 NA non-coding downstream 642787 16224790 ~ 16307937 (-)
XLOC_013324 NA non-coding downstream 932637 15991454 ~ 16018087 (-)
XLOC_013323 NA non-coding downstream 980151 15939261 ~ 15970573 (-)
XLOC_013321 CR854977.1 non-coding downstream 1074944 15875662 ~ 15875780 (-)
XLOC_013345 NA non-coding upstream 537343 17491321 ~ 17492706 (-)
XLOC_013349 NA non-coding upstream 823549 17777527 ~ 17786790 (-)
XLOC_013351 NA non-coding upstream 1158016 18111994 ~ 18113888 (-)
XLOC_013355 BX470163.3 non-coding upstream 1615263 18569241 ~ 18569322 (-)
XLOC_013356 BX470163.2 non-coding upstream 1623496 18577474 ~ 18577549 (-)

Expression


Co-expression Network