XLOC_013338 (tbc1d15)


Basic Information

Item Value
gene id XLOC_013338
gene name tbc1d15
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007129.7
NCBI id CM002902.2
chromosome length 51023478
location 17002164 ~ 17020231 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00026369
GGCGGCCACAACTCCTCCCAAGGTGGTGTTTGAACATGAGGGAGTTTTTATTCACTCGTCTCCAGATGAATCCGAGGATCAGGATTTAATATCAGGATTCCTGAGGATTGTTGAGAAGGAAGGTGAAACCCTTGTGGAATATAAACCCCTAGAGGATGCAGATCCCTCAAACATGCTGTGTGCCTGCAAGGACTCCAGCTCAGTGGTGGAATGGACACAAAGTTCAGAAGAAAACCCTCATCGTCCTGTTGACCATCAGCTAAGCTATGAAACAGAGTGGGACATGATCAATGCGGTCTCATTCCGGAGAAAAGTCCATGCAAATGGAGATGGTGGATCAAATCACGTGAATGAACAGAACAAGCGAGCTTTCTCTTTTAATGTGTGTGACCTCAGGTCCGTCACAGTCAAATGTGAGGGCTGGTCATACCTCACTTTCCGCTTGAAGGATGGCACAGCATTGCCAGCCATTCATTTCCACCAGGGAGGAAGCAAAGCGTTCCTGGATAGTCTGAGGAAATCAGTTCAGATCAACGAGAGTCCCGATGATGAAAGTGTCTTGATAGTCAGCACCTATAGCAAAGCCTTTTCGCAGTCTTTTGAGAATCTTCTGGATGATACAAACTATGGCTTTGTACAGAAATTCAAGAAGGATCCTTATACAACCACACTGGGTGGCTTCTCCAAAGTCACTAACTACCTCTTTGACGCGTTTCGGGCTCCTGAGTTAGAGTGCCAACAGCGGCCTGCTGAGGAGGTGGCAGATGTGCTCGGAGAACTTATTCCTGGACTAGAGATCAACCAGCAGGAGGAGCCGGGATTTGAAGTCATCACTAGACTTGATCTGGGACCCAGGCCAGAGATGCAAAGGACGGGGCCAGTAACAATGGAGGAATGGGCAAAGTACCAGGATTTAGAGGGAAGGATGACCAATTTACCTCATTTAAAGGATGCCATTTTTAAAGGGGGTCTCTGTCACGCGGTGAGAAAAGAGGCTTGGAAATTTTTGCTTGGTTATTTTCCATGGAGCAGCACTCATGAAGAAAGAAAGCTCCTGCAAAAGAGAAAAACTGATGAATACTTCAGAATGAAACTCCAGTGGAAGTCTGTAAGTGAAGAGCAAGAAAGGAGAAACTCGAGATTACGAGATTACAGGAGCCTCATTGaAAAAGATGTGAACCGAACAGATCGCAATAATAAGTTTTACGAAGGCCTGGACAACCCTGGCTTGATATTATTACACGACATCCTGATGACGTACTGCATGTACGACTTTGATTTAGGGTATGTGCAGGGCATGAGCGATCTGCTCTCTCCCATCCTCTTTGTGATGGAAAATGAAGTGGATGCCTTCTGGTGCTTTGTTTCCTTCATGGATGAAATGCATGAAAACTTTGAAGAACAGATGCAGGGGATGAAGACTCAACTAATTCAACTCAGCACTTTGCTTCGGCTGCTAGACCTGGCCTTCTGGAACTATCTAGAGGCTCAAGATTCTGGGTACTTATATTTCTGTTTCCGCTGGTTATTGATCCGCTTCAAGAGAGAACTGCATTTTCAGGATGTCCTTCGCCTTTGGGAGGTCATGTGGACCAGACTGCCTTGCCAAAACTTTCACCTTCTGGTGTGCTGTGCCATTTTAGACTCagagaaacaaaaaattatgGACAGAAAATATGGATTCAATGAAATCCTAAAGCATATAAATGAACTCTCCATGAAACTGGACATCGAAGAAATCCTTAGTAAATCTGAATCTATCTGTATGCAGATAAAGAGTTGTAAGGACTTGCCCCATTCAGTGAGTGAGATTCTTGGTCTGAACACAGTCAGTGAACCCTCTGCAGCATTAGAAACCAGTGAATATGGAATACTTGAGTCACCTCAAACCTCACCGAGATCCTCACACAGACAAGATCACGTCGTCTCCAACGGCCACAGCCACTTAAAAGAAACAACACAAAACGGCTGCAAAGTAGCCTTCATTTCCTAGTGCACAGCACTACATGATGTATAGTACAGATTTTATAGCCTCTGTATTCCAGCAAAAAGAACAGTATTGGGTGTCATGTAGATATTTGCTACCAAATGCCACATTGTAAAATATCCCAGAGAAAATATATGAATGTAAAACTAGGACCCAAAAAGGATCCTAAagcattatttttgtaatatctTGTACCATATTGTCTTTCATTGAAATAATCATTCCTTCTcactgtagagagagagagaaagttttCATAATGTTTCAGGGGTGGGGGATTCATtgttgaatattatatattttttgttcttatCAGTTTGCCCTTTTCCTAAATAATTCAGATTCAAATTAAAATCTGTCTTCCTGCCA

Function

symbol description
tbc1d15 Predicted to enable GTPase activator activity. Predicted to be involved in activation of GTPase activity and intracellular protein transport. Is expressed in polster. Orthologous to human TBC1D15 (TBC1 domain family member 15).

GO:

id name namespace
GO:0006886 intracellular protein transport biological_process
GO:0090630 activation of GTPase activity biological_process
GO:0005096 GTPase activator activity molecular_function

KEGG:

id description
ko04137 Mitophagy - animal
ko04131 Membrane trafficking

ZFIN:

id description
ZDB-GENE-041111-251 Predicted to enable GTPase activator activity. Predicted to be involved in activation of GTPase activity and intracellular protein transport. Is expressed in polster. Orthologous to human TBC1D15 (TBC1 domain family member 15).

Ensembl:

ensembl_id ENSDARG00000057218

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00026369 True 2356 mRNA 0.43 17 17002164 17020231

Neighbor

gene id symbol gene type direction distance location
XLOC_013337 tph2 coding downstream 1108 16989764 ~ 17001056 (-)
XLOC_013336 akip1 coding downstream 48186 16950724 ~ 16953978 (-)
XLOC_013335 znf143b coding downstream 65055 16924865 ~ 16937109 (-)
XLOC_013334 wee1 coding downstream 77943 16918426 ~ 16924221 (-)
XLOC_013333 swap70b coding downstream 85324 16876833 ~ 16916840 (-)
XLOC_013339 has3 coding upstream 7643 17027874 ~ 17030870 (-)
XLOC_013340 tango6 coding upstream 12081 17032312 ~ 17075098 (-)
XLOC_013341 il17c coding upstream 55754 17075985 ~ 17147803 (-)
XLOC_013342 zfpm1 coding upstream 250196 17270427 ~ 17399376 (-)
XLOC_013343 ces2a coding upstream 388239 17408470 ~ 17415609 (-)
XLOC_013384 BX323829.1 misc upstream 2521871 19542102 ~ 19542231 (-)
XLOC_013329 NA non-coding downstream 624823 16372210 ~ 16377341 (-)
XLOC_013327 NA non-coding downstream 694227 16224790 ~ 16307937 (-)
XLOC_013324 NA non-coding downstream 984077 15991454 ~ 16018087 (-)
XLOC_013323 NA non-coding downstream 1031591 15939261 ~ 15970573 (-)
XLOC_013321 CR854977.1 non-coding downstream 1126384 15875662 ~ 15875780 (-)
XLOC_013345 NA non-coding upstream 471090 17491321 ~ 17492706 (-)
XLOC_013349 NA non-coding upstream 757296 17777527 ~ 17786790 (-)
XLOC_013351 NA non-coding upstream 1091763 18111994 ~ 18113888 (-)
XLOC_013355 BX470163.3 non-coding upstream 1549010 18569241 ~ 18569322 (-)
XLOC_013356 BX470163.2 non-coding upstream 1557243 18577474 ~ 18577549 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
bowfin (Amia calva) AMCG00006704 NA coding CM030134.1 CM030134.1 14978693 ~ 15002282 (+)