XLOC_013345


Basic Information

Item Value
gene id XLOC_013345
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007129.7
NCBI id CM002902.2
chromosome length 51023478
location 17491321 ~ 17492706 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00026959
ttgattataatgatttttttctgatgttaaTCTAAGGTGTGCTATTATTTTTAGGGAAAACTGTCTTTTTGTGATTCGACTTATTACGCAAAAATACCCATATTTTATCTTTTCCTAAAAATCTTCACCTGCTTTTGTTATAAGAAAATAGTAGTCACATTTCAGTATCCATCATCTTGTAACGTTAGGCCTATATTACGTCGAAAAGGCAATCAGAAAAGGCGGGAACACCGGGACGAACACGAATGAGTCACACGACCTCATTGGTCACGACCTGGTCACGACTGGACATTACAAGCTCTGGGGTAGCAAGGCTCAAGGGGTTtggactgttgcctcacaacaagaaggttgctgtttcgagtcgCAGCTGGACTAGGAAGCCTTTCTGTTTTTCCAACCATCAAGATTGTGCAGTATactgtaagtgaattgaataaactcaaaCAATAAtatttgagtgtgtttgtttccCAACACTGGGGGTTCATGAATGcactctcagtgctgggttgcggctgaaaggcaCCATATATCACCATATTTTTTCTGTAAGTGCACTTTATAACTtttacctgtatcctgcacttgctgctattgcacttcAGGCTAGACCTAAGCTGCATTTCGTTGCTT

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00026959 True 636 lncRNA 0.40 2 17491321 17492706

Neighbor

gene id symbol gene type direction distance location
XLOC_013344 foxl1 coding downstream 5902 17483557 ~ 17485419 (-)
XLOC_013343 ces2a coding downstream 75712 17408470 ~ 17415609 (-)
XLOC_013342 zfpm1 coding downstream 91945 17270427 ~ 17399376 (-)
XLOC_013341 il17c coding downstream 343518 17075985 ~ 17147803 (-)
XLOC_013340 tango6 coding downstream 416223 17032312 ~ 17075098 (-)
XLOC_013346 b3gnt9 coding upstream 19289 17511995 ~ 17513426 (-)
XLOC_013347 bbs2 coding upstream 23863 17516569 ~ 17531483 (-)
XLOC_013348 psme3ip1 coding upstream 214982 17707688 ~ 17724295 (-)
XLOC_013349 NA coding upstream 284821 17777527 ~ 17786790 (-)
XLOC_013350 CR387935.1 coding upstream 594554 18087260 ~ 18122969 (-)
XLOC_013384 BX323829.1 misc upstream 2049396 19542102 ~ 19542231 (-)
XLOC_013329 NA non-coding downstream 1113980 16372210 ~ 16377341 (-)
XLOC_013327 NA non-coding downstream 1183384 16224790 ~ 16307937 (-)
XLOC_013324 NA non-coding downstream 1473234 15991454 ~ 16018087 (-)
XLOC_013323 NA non-coding downstream 1520748 15939261 ~ 15970573 (-)
XLOC_013321 CR854977.1 non-coding downstream 1615541 15875662 ~ 15875780 (-)
XLOC_013351 NA non-coding upstream 619288 18111994 ~ 18113888 (-)
XLOC_013355 BX470163.3 non-coding upstream 1076535 18569241 ~ 18569322 (-)
XLOC_013356 BX470163.2 non-coding upstream 1084768 18577474 ~ 18577549 (-)
XLOC_013357 BX470163.1 non-coding upstream 1085108 18577814 ~ 18577894 (-)

Expression


Co-expression Network