XLOC_013346 (b3gnt9)


Basic Information

Item Value
gene id XLOC_013346
gene name b3gnt9
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007129.7
NCBI id CM002902.2
chromosome length 51023478
location 17511995 ~ 17513426 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00026389
GCCAACCAGCTCACGGACCCTCCTCAGTGGAGCATCAATGGGACAGCAGACAAAGCTAGTCCCTACAAAATCTCTGGACATACCACCTTGCCAGCCTGAAGTGCAGACCAAGTCTAAACCACAGGGACAATCAAAGGTCAAACCTCAAAAAGCGCGTAGCAAAACAAAGTCAAAATTTCAGCAGGCCTCAACAACAGCAAGTCTGCTACCAACACAACATTCTTTTGACTTTGCTGATTACCTTCGAAAGAAAGACCAGCGGGACTTTAAGATGCTAATTGATCAGCCAACAAAGTGTTCTGAACCAGAAAGCGCCCCCTACATGCTGATCGCAATAAAATCAGTCACAACAGACTTCGACAAACGCCAGGTTGTTCGGCGTACATGGGGACGAGAAGGGGTGTTCCAGAAAAACATCAACATCAAGAGAGTTTTTCTTCTTGGTGTGCCCCAAAATCAGTCAGCGCTCCCATTATGGGACAAACTTTTGGAATACGAGAGCCACACTTTTGGGGACATCCTCTTGTGGGACTTTGAAGACACCTTCTTCAACCTGACACTAAAAGAAATCCATTTCTTGCAATGGATTAATGTGAGTTGCCCAAaaacaaagtttatttttaaggGTGACGCCGATGTTTATGTGAACATTGACAATATCCTGGAGATGCTTGAGAGTCAAGAGATCGATAAGGATCTTTTTGTTGGTGACATCATTGTCCATGCGAAACCAATTCGCAGACGCAGTAGTAAGTACTTTGTGCCTGAGTTTATTTACGGCCAGGGGATCTATCCATCCTATGCGGGAGGAGGTGGATTTGTCATGTCAGGACACACCGCATTGAAGCTCCACCTCGCCTGCAAAGAGGTGGAGCTCTTCCCCATTGATGACGTCTTTCTGGGCATGTGCCTGCTGAGAATTGGCCTTCAGCCGACCCGCCACGAGGGTTTCCGCACCTTCGGGATTGTAAAACCATCAGCTGCACCGCACCTTCAAGTGTTTGACCCCTGTTTCTACAGAGAGCTGATGGTGGTACACAGCCTGACTGTCCCCCAGATTTGGCTCATGTGGAACCTTCTGCATGACCCTAACCTTCGGTGTCACAGGAGTCAGGATCCCACAGTTTTTCCCTTTCAGTGGAGTGAAAAAATTGGCAAGACGGCTAGAAACAAGGCAGAGGAGAATCTAAGGAATAAGGACTATGGGATGAAAGTGTTTGTGGAGCATTAACTCTTCACTGTACTGTGACTAGAAGGAGCCCCGTTCATACTGCCTTCAGCTGACCAGCCATGAGGGTTTCCGTAATTGCGGGATTGTGAAACCATCAGCTGCACCGCACCTCTAGGTGTTTGACCCCTACTTCTATAGAAAGCTGATGGTGGTGCACAGCCTGACTGTCCCCTAGATTTGGCTCATGTGGAACCTTCTGTA

Function

symbol description
b3gnt9 Predicted to enable UDP-glycosyltransferase activity. Predicted to be involved in poly-N-acetyllactosamine biosynthetic process. Predicted to act upstream of or within protein glycosylation. Predicted to be located in Golgi apparatus and membrane. Predicted to be integral component of membrane. Predicted to be active in Golgi membrane. Orthologous to human B3GNT9 (UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 9).

GO:

id name namespace
GO:0006486 protein glycosylation biological_process
GO:0030311 poly-N-acetyllactosamine biosynthetic process biological_process
GO:0005794 Golgi apparatus cellular_component
GO:0000139 Golgi membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0016740 transferase activity molecular_function
GO:0016757 transferase activity, transferring glycosyl groups molecular_function
GO:0016758 transferase activity, transferring hexosyl groups molecular_function
GO:0008532 N-acetyllactosaminide beta-1,3-N-acetylglucosaminyltransferase activity molecular_function
GO:0008375 acetylglucosaminyltransferase activity molecular_function
GO:0008376 acetylgalactosaminyltransferase activity molecular_function

KEGG:

id description
ko01003 Glycosyltransferases

ZFIN:

id description
ZDB-GENE-060503-611 Predicted to enable UDP-glycosyltransferase activity. Predicted to be involved in poly-N-acetyllactosamine biosynthetic process. Predicted to act upstream of or within protein glycosylation. Predicted to be located in Golgi apparatus and membrane. Predicted to be integral component of membrane. Predicted to be active in Golgi membrane. Orthologous to human B3GNT9 (UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 9).

Ensembl:

ensembl_id ENSDARG00000041616

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00026389 True 1432 mRNA 0.48 1 17511995 17513426

Neighbor

gene id symbol gene type direction distance location
XLOC_013345 NA coding downstream 19289 17491321 ~ 17492706 (-)
XLOC_013344 foxl1 coding downstream 26576 17483557 ~ 17485419 (-)
XLOC_013343 ces2a coding downstream 96386 17408470 ~ 17415609 (-)
XLOC_013342 zfpm1 coding downstream 112619 17270427 ~ 17399376 (-)
XLOC_013341 il17c coding downstream 364192 17075985 ~ 17147803 (-)
XLOC_013347 bbs2 coding upstream 3143 17516569 ~ 17531483 (-)
XLOC_013348 psme3ip1 coding upstream 194262 17707688 ~ 17724295 (-)
XLOC_013349 NA coding upstream 264101 17777527 ~ 17786790 (-)
XLOC_013350 CR387935.1 coding upstream 573834 18087260 ~ 18122969 (-)
XLOC_013351 NA coding upstream 598568 18111994 ~ 18113888 (-)
XLOC_013384 BX323829.1 misc upstream 2028676 19542102 ~ 19542231 (-)
XLOC_013329 NA non-coding downstream 1134654 16372210 ~ 16377341 (-)
XLOC_013327 NA non-coding downstream 1204058 16224790 ~ 16307937 (-)
XLOC_013324 NA non-coding downstream 1493908 15991454 ~ 16018087 (-)
XLOC_013323 NA non-coding downstream 1541422 15939261 ~ 15970573 (-)
XLOC_013355 BX470163.3 non-coding upstream 1055815 18569241 ~ 18569322 (-)
XLOC_013356 BX470163.2 non-coding upstream 1064048 18577474 ~ 18577549 (-)
XLOC_013357 BX470163.1 non-coding upstream 1064388 18577814 ~ 18577894 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000013_05583328_05584677 B3GNT9 coding CI01000013 null 5583328 ~ 5584704 (+)