XLOC_013348 (psme3ip1)


Basic Information

Item Value
gene id XLOC_013348
gene name psme3ip1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007129.7
NCBI id CM002902.2
chromosome length 51023478
location 17707688 ~ 17724295 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00026392
TTGCAGATGACTTCATGAACCACCTACAGTGTTTTTCCTGATAATAAACAGCCATTTAGGTTCTGCCATGGCAGACCTCAGCCGAAAGTTTGTGTCAGAGTCTGAACTCGACGAGAAACGAAAAAAAAGGCAGGAAGAATGGGAGAAAGTCCGCAAGCCGGATGACCCAGAGGAGGCGCCAGAGGAAGAATATGACCCTCGATCTCTGTTTGAAAGGCTACAAGAGCAGAAGGACAAAAAGCAGGAAGAATATGAGGAGCAGTTCAAATTCAAGAACATGGTTAAAGGCTTGGATGAAGACGAAACCAGTTTTCTTGATGAGGTGTCGCGGAAGCAGTCTCTAATAGAGAAACACAGACGGGAGGAGGACGCTCAGGAGATAAAAGAATACAGAAGCGCTCTGCAGAAGCTGGCAGCCACCGATAGCCAGAAGAAGGAGTCGGAGAAAAAAGCAGGACCCAAACCTTCAGAGCACAGGACCAGTCACCTGTCTCAAGCCCACCTGCTTGCTGGAGCAGTCAAACGACGCAGCTCATCTCAGTCCTCAGAAGGGAGTAAAAAGCAGAAAACAGAGGAGAGCGTAACAGGCAACGGCAGTCAGACAGAGCAGACGAGGGAAGACCCCAAATCCCCCGGCACTGGTGCGAACCGCTCCGGCGTCCTCCACCTGCCCTCGGCCGCCGTGTGTGTGGGGATCCTCCCAGGGCTCGGCGCATACTCGGGCAGCAGCGACTCAGAGTCCAGCAGCGACCTCGAAGTTTAACCCCCCGGCAGCTTAACCTGGTGACGCACCTTCCCATCTACCCTTGCGGTTTCTGCAGAGCTCTAGTGGTCAACGGGACACTGACTGACAGCTGCGGATCAAGAAGACATGAAACATTTAGTCCGAATCCATCACAGGACAAAGCAGACATGTTGAAATGGCTTGGTTTGAATTTTTGCGTTTCTttcttgtttatgtttttaagacGAAATGCTGCAATGCTAAGAATGCTGGATTTTTCATGAACTCTGCTCTTTAAGGGCACCAAACCTtgtgtttgtttgctggaaaATAACCAGTGATGACAGAATggacaataaaagtgtttctcTTGTG
>TCONS_00026393
CAAACCCGGAGAAGAATCTATTGCAGATGACTTCATGAACCACCTACAGTGTTTTTCCTGATAATAAACAGCCATTTAGGTTCTGCCATGGCAGACCTCAGCCGAAAGTTTGTGTCAGAGTCTGAACTCGACGAGAAACGAAAAAAAAGGCAGGAAGAATGGGAGAAAGTCCGCAAGCCGGATGACCCAGAGGAGGCGCCAGAGGAAGAATATGACCCTCGATCTCTGTTTGAAAGGCTACAAGAGCAGAAGGACAAAAAGCAGGAAGAATATGAGGAGCAGTTCAAATTCAAGAACATGGTTAAAGGCTTGGATGAAGACGAAACCAGTTTTCTTGATGAGGTGTCGCGGAAGCAGTCTCTAATAGAGAAACACAGACGGGAGGAGGACGCTCAGGAGATAAAAGAATACAGAAGCGCTCTGCAGAAGCTGGCAGCCACCGATAGCCAGAAGAAGGAGTCGGAGAAAAAAGCAGGACCCAAACCTTCAGAGCACAGGACCAGTCACCTGTCTCAAGCCCACCTGCTTGCTGGAGCAGTCAAACGACGCAGCTCATCTCAGTCCTCAGAAGGGAGTAAAAAGCAGAAAACAGAGGAGAGCGTAACAGGCAACGGCAGTCAGACAGAGCAGACGAGGGAAGACCCCAAATCCCCCGGCACTGGTGCGAACCGCTCCGGCGTCCTCCACCTGCCCTCGGCCGCCGTGTGTGTGGGGATCCTCCCAGGGCTCGGCGCATACTCGGGCAGCAGCGACTCAGAGTCCAGCAGCGACCTCGAAGTTTAACCCCCCGGCAGCTTAACCTGGTGACGCACCTTCCCATCTACCCTTGCGGTTTCTGCAGAGCTCTAGTGGTCAACGGGACACTGACTGACAGCTGCGGATCAAGAAGACATGAAACATTTAGTCCGAATCCATCACAGGACAAAGCAGACATGTTGAAATGGCTTGGTTTGAATTTTTGCGTTTCTttcttgtttatgtttttaagacGAAATGCTGCAATGCTAAGAATGCTGGATTTTTCATGAACTCTGCTCTTTAAGGGCACCAAACCTtgtgtttgtttgctggaaaATAACCAGTGATGACAGAATggacaataaaagtgtttctcTTGTG
>TCONS_00026394
AAAGCAGGACCCAAACCTTCAGAGCACAGGACCAGTCACCTGTCTCAAGCCCACCTGCTTGCTGGAGCAGTCAAACGACGCAGCTCATCTCAGTCCTCAGAAGGGAGTAAAAAGCAGAAAACAGAGGAGAGCGTAACAGGCAACGGCAGTCAGACAGAGCAGACGAGGGAAGACCCCAAATCCCCCGGCACTGGTGCGAACCGCTCCGGCGTCCTCCACCTGCCCTCGGCCGCCGTGTGTGTGGGGATCCTCCCAGGGCTCGGCGCATACTCGGGCAGCAGCGACTCAGAGTCCAGCAGCGACCTCGAAGGTAGCGTGGACGAGATTGGCTCTTCCATAAAGCGCCACAGGCtcttcagataaacacacacacacacacacagatcacactcacttactcactaTCTCTCCCTCACCTTCTGAGCGGCGCGGAGCACAAATCATTAGCTAAAGCCATTTAGCCGTAGGTATTATTTCAGTTTGGAGTTAAGTCTGTGTTTGGTTATTTGCTTGATGTTTATTAAAGGCTGTAATGTTAACTTCTATTGTGGTTGTTGATGTCTTGTGCTCTCAAAACATGACACTTCCCCCATCCTCCTCCATATTACATTCCATACAGTTTAACCCCCCGGCAGCTTAACCTGGTGACGCACCTTCCCATCTACCCTTGCGGTTTCTGCAGAGCTCTAG

Function

symbol description
psme3ip1 Predicted to be active in nucleus. Orthologous to human PSME3IP1 (proteasome activator subunit 3 interacting protein 1).

GO:

id name namespace
GO:0008150 biological_process biological_process
GO:0005634 nucleus cellular_component
GO:0003674 molecular_function molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-6692 Predicted to be active in nucleus. Orthologous to human PSME3IP1 (proteasome activator subunit 3 interacting protein 1).

Ensembl:

ensembl_id ENSDARG00000041631

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00026392 False 1099 mRNA 0.50 8 17707688 17721810
TCONS_00026393 False 1119 mRNA 0.50 9 17707688 17724295
TCONS_00026394 True 690 lncRNA 0.52 3 17707958 17712667

Neighbor

gene id symbol gene type direction distance location
XLOC_013347 bbs2 coding downstream 176205 17516569 ~ 17531483 (-)
XLOC_013346 b3gnt9 coding downstream 194262 17511995 ~ 17513426 (-)
XLOC_013345 NA coding downstream 214982 17491321 ~ 17492706 (-)
XLOC_013344 foxl1 coding downstream 222269 17483557 ~ 17485419 (-)
XLOC_013343 ces2a coding downstream 292079 17408470 ~ 17415609 (-)
XLOC_013349 NA coding upstream 53232 17777527 ~ 17786790 (-)
XLOC_013350 CR387935.1 coding upstream 362965 18087260 ~ 18122969 (-)
XLOC_013351 NA coding upstream 387699 18111994 ~ 18113888 (-)
XLOC_013352 lonp2 coding upstream 751379 18475674 ~ 18524624 (-)
XLOC_013353 il34 coding upstream 802875 18527170 ~ 18543358 (-)
XLOC_013384 BX323829.1 misc upstream 1817807 19542102 ~ 19542231 (-)
XLOC_013329 NA non-coding downstream 1330347 16372210 ~ 16377341 (-)
XLOC_013327 NA non-coding downstream 1399751 16224790 ~ 16307937 (-)
XLOC_013324 NA non-coding downstream 1689601 15991454 ~ 16018087 (-)
XLOC_013323 NA non-coding downstream 1737115 15939261 ~ 15970573 (-)
XLOC_013355 BX470163.3 non-coding upstream 844946 18569241 ~ 18569322 (-)
XLOC_013356 BX470163.2 non-coding upstream 853179 18577474 ~ 18577549 (-)
XLOC_013357 BX470163.1 non-coding upstream 853519 18577814 ~ 18577894 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
tiger barb (Puntius tetrazona) psme3ip1 fam192a,LOC107672265,LOC107583875,LOC107577720,LOC107740335 misc NC_056716.1 CM032085.1 25438172 ~ 25444611 (-)