XLOC_013351


Basic Information

Item Value
gene id XLOC_013351
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007129.7
NCBI id CM002902.2
chromosome length 51023478
location 18111994 ~ 18113888 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00027286
gtagattccgtctggccctgatcATCAGTAacagttagttttgatttcttgaaGACAAGTAAAATTTCTTATCTGCAAATAACATTAAGAAATACCATACATTTGGTTTAGACTGGAATAACTTCAGAAAGACAGTTAAACTGAGGTAAACTCAGGATACGTTAACGTTTGAAGTAAAATGGCGGTAAACCACGTGACTGCAGTAACAGCAAATAggctaaaaacatgtttttaacgCATTTAAAACGTTTTTTATCTTTAATCAAAAAAAGGAGAGCTTTAAGCAGGACTCATGTAAACATCTTCCAATCCAGTTCCCTGCTCATTTGCAAATATCAGACCGTATTTCTCCACACAAAACCACAGACATCAATATGTCGCACAATGTAACGTTAGCCTACTTGAGCACATTGTCACCATCCATCACTCGAACTGAACTCCACCTTCGGTTTTTCTCTCTTCATATAAGTGTGTAACCACCTCAATTTTCCCCTCTATCAATCTTAAAAAGGAACTCACTTCCAGTAGAGACGCCATATGGCTGTTTTTCGTCGTTGCGGGCCGCTGTAGTGTGTGAAGGCCGAAGTCTCCGCCGGTAATTTAGTCAGCGCGGGAGAGATGGATGACGCGCCTCACTCCAGTCAACGGGCCAAGCGCGCGCCCGGAGAGGCACCTGGCACGTGCCACAGCAGGAAGCATTTGGCGTGCATCTCGCGCGACCTTTCTGCCACCCCACTCTATAACACCGTGCTCACAAGCAGACATAAATCCAGATGATCACATTTATAACGCGTTTGATGACTTTTATAGCTGATGTAACTGTCAGTGTTGGTCACTGTCCTAAATGAGCAGGCATACAGATTAGCGCATCTCGGATAAAGATGAGTGCGATTACAGTGAGGTGTTTTTACTCTTCAAAGTCAACTGTATGATATGTGTTAAGGTTGTGAGAGTTTAGGTGTTTACATTATCAGCGTGATCAAATCTTTACTGGATAAAATGTTAATTCTACAAAAGTGTTTCATTGCTTTGACATGGGTGTtacataattaattcattttacttcggcttagtcacttttatcaggggtcgccacagcagaatgaaccgccaacttatagagcatatgttttacgcagcagatgctcttccagctacaacccagtaatgggaaacatccatactcaatcacacacatacagccaatttagtttatccaattcacctatagcgcatgtctttggacttgtggtgaaactggagcacccggaggaaacccacatgaacacatggagaaattcaaactccacacagaaatgccaactgacccagctgtggcttgaaccagcgaactccttgctgtgaggcgattgtgctacccactctgCCACCGTGATGCTATTGTGCTGTtacaaaaagtaaattttttggTATAGAAATTTTACattaacagacttttattttgtgtttagcgGTGTAAATATGAGATTGCATTTTTTGCTTAATGTTGAGACTGATAGTTTTTTGATTTCCAAACTTGATCTTCCAGAAAAGCCTAATGTATCAAATAACATACAAAACCATTTTcttgtattcattaattttccttcgacttagtccctttattcaccaggggtcgccacagcggaatgaaccgccaacttatccagcatgttttacacagcggatgcccttccagctgcaacccagtactggaaaggtccatacacactcattcacacacataccctagagccaatttagtttatttaattcacctagaGTACGTCTTTAGACTGGGGGGAAAAGAGA

Function

GO:

id name namespace
GO:0044085 cellular component biogenesis biological_process
GO:0016072 rRNA metabolic process biological_process
GO:0022607 cellular component assembly biological_process
GO:0001732 formation of cytoplasmic translation initiation complex biological_process
GO:0071826 ribonucleoprotein complex subunit organization biological_process
GO:0022613 ribonucleoprotein complex biogenesis biological_process
GO:0022618 ribonucleoprotein complex assembly biological_process
GO:0065003 protein-containing complex assembly biological_process
GO:0034470 ncRNA processing biological_process
GO:0006364 rRNA processing biological_process
GO:0043604 amide biosynthetic process biological_process
GO:0006396 RNA processing biological_process
GO:0043043 peptide biosynthetic process biological_process
GO:0006412 translation biological_process
GO:0006413 translational initiation biological_process
GO:0043933 protein-containing complex subunit organization biological_process
GO:0010467 gene expression biological_process
GO:0042254 ribosome biogenesis biological_process
GO:0006518 peptide metabolic process biological_process
GO:0034622 cellular protein-containing complex assembly biological_process
GO:0021983 pituitary gland development biological_process
GO:0002181 cytoplasmic translation biological_process
GO:0002183 cytoplasmic translational initiation biological_process
GO:0034641 cellular nitrogen compound metabolic process biological_process
GO:0007420 brain development biological_process
GO:0030902 hindbrain development biological_process
GO:0034660 ncRNA metabolic process biological_process
GO:0060322 head development biological_process
GO:1990904 ribonucleoprotein complex cellular_component
GO:0005852 eukaryotic translation initiation factor 3 complex cellular_component
GO:0032991 protein-containing complex cellular_component
GO:0033290 eukaryotic 48S preinitiation complex cellular_component
GO:0016282 eukaryotic 43S preinitiation complex cellular_component
GO:0070993 translation preinitiation complex cellular_component
GO:0005730 nucleolus cellular_component
GO:0008135 translation factor activity, RNA binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0030515 snoRNA binding molecular_function
GO:0097159 organic cyclic compound binding molecular_function
GO:1901363 heterocyclic compound binding molecular_function
GO:0003723 RNA binding molecular_function
GO:0003729 mRNA binding molecular_function
GO:0003743 translation initiation factor activity molecular_function

KEGG:

id description
ko00230 Purine metabolism
ko00240 Pyrimidine metabolism
ko03020 RNA polymerase
ko03230 Viral genome structure
ko05164 Influenza A
ko05016 Huntington disease
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00027286 True 1812 lncRNA 0.42 2 18111994 18113888

Neighbor

gene id symbol gene type direction distance location
XLOC_013349 NA coding downstream 325204 17777527 ~ 17786790 (-)
XLOC_013348 psme3ip1 coding downstream 387699 17707688 ~ 17724295 (-)
XLOC_013347 bbs2 coding downstream 580511 17516569 ~ 17531483 (-)
XLOC_013346 b3gnt9 coding downstream 598568 17511995 ~ 17513426 (-)
XLOC_013345 NA coding downstream 619288 17491321 ~ 17492706 (-)
XLOC_013352 lonp2 coding upstream 361786 18475674 ~ 18524624 (-)
XLOC_013353 il34 coding upstream 413282 18527170 ~ 18543358 (-)
XLOC_013354 sf3b3 coding upstream 433135 18547023 ~ 18587745 (-)
XLOC_013355 BX470163.3 coding upstream 455353 18569241 ~ 18569322 (-)
XLOC_013356 BX470163.2 coding upstream 463586 18577474 ~ 18577549 (-)
XLOC_013384 BX323829.1 misc upstream 1428214 19542102 ~ 19542231 (-)
XLOC_013329 NA non-coding downstream 1734653 16372210 ~ 16377341 (-)
XLOC_013327 NA non-coding downstream 1804057 16224790 ~ 16307937 (-)
XLOC_013324 NA non-coding downstream 2093907 15991454 ~ 16018087 (-)
XLOC_013357 BX470163.1 non-coding upstream 463926 18577814 ~ 18577894 (-)
XLOC_013358 NA non-coding upstream 515178 18629066 ~ 18634673 (-)
XLOC_013360 BX649641.5 non-coding upstream 582319 18696207 ~ 18701764 (-)

Expression


Co-expression Network