XLOC_013352 (lonp2)


Basic Information

Item Value
gene id XLOC_013352
gene name lonp2
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007129.7
NCBI id CM002902.2
chromosome length 51023478
location 18475674 ~ 18524624 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00026396
TTTGCCCCAGTTTGTCGTACGATGAAGGCGTTCCTGACACCATAGTGCAGCGCGATTACTAGTTttaaactgtaaacatttattcaaaccCTTAACAATGTCATCCAACAGTGGTATTCAAATCCCCAGCCGGCTACCTTTGCTGTGCACTCATGATGGAGTGCTGTTACCAGGCTCGACCATGAGAGTCAGCGTCGATACGGCGAGAAATATGCAGTTAGTGAAGAGCAGACTGCTGAAGGGAACCTCGCTGAAAAGCACCATAATCGGGGTTATTCCCAACACCCGAGACCCTGAGCACGACAGTGACGAGCTGCCGTCTTTACACAGTATTGGCACAGCAGGATTGGCGGTTCAAGTTGTGGGCAGCAACTGGCCGAAGCCTCACTACACACTGCTCATCACAGGCTTGTGTCGCTTTCGAGTGAGCCAGCTGATGAGAGAGAGACCCTTCCCCGTGGCCGAGGTGGAACAGCTGGACAAACTAGAGCAGTACACAGAGGGAGATCCAGCTGACGGAGAGCTGGGAGAGCTGTCACAGAGGTTCTATCAGGCGGCTGTACAGCTGGTTGGGATGTTGGATATGTCGGTGCCTGTGGTCGCAAAACTCAGGAGGCTGTTGGACAGTTTGCCCAAAGAAACTCTTCCTGATGTCCTGGCTGCCATGATCCGCACTTCCAACAAAGAGAAACTGCAGGTTCTGGATGCAGTAGACTTGGAGGAACGCTTTAAGAAGGCCCTTCCGCTGCTCACCAGACAGATTGAGGGCCTCAAGTTGCTTCAAAAGACCCGCAAACTCAGACCGGATGATGATAAAAGAGTTCTGTCCATCCGTAAAGGTGGTGTGTTCCCCGGTCGCCAGTTCTCTCTAGATGAAGAGGTGGAGGATGAGGACAGTGATGACACTGCTCTGCTGGAGAGAAAGGTGAAGGCAGCTGCTATGCCTGAGGCAGCTCTGCGCGTCTGTCTCAAAGAGCTCAGACGATTAAAAAAGATGCCGCAGTCTATGCCAGAGTACGCCCTCACTCGCAACTATCTAGAGATGATGGTGGAGTTGCCTTGGAGTAAAAGCACTACAGattgccTGGACATCCGTGCGGCACGTGTGCTCTTAGATAATGATCACTATGCCATGGAAAAGCTGAAGAAGAGAGTACTGGAGTATCTGGCTGTGCGTCAGCTCAAAAGCACCCTTAAAGGACCCATACTGTGTTTCGTGGGCCCCCCCGGTGTGGGAAAAACCAGTGTTGGCCGGTCCATCGCTCGCACACTTGGCCGAGAGTTTCACCGCATAGCCCTGGGGGGAGTCTGTGATCAGTCTGACATCCGTGGACACAGGCGCACGTACGTGGGTAGCATGCCTGGTCGCATTATAAATGGGCTAAAGACTGTCGGGGTAAACAATCCTGTGTTTTTATTGGATGAGGTGGACAAACTGGGGAAGAGTCTACAGGGAGATCCTGCTGCCGCCCTGCTGGAGGTTCTGGACCCAGAGCAGAACCACAGCTTTACTGACCATTACCTCAACGTGCCATTTGACCTCTCACAAGTGCTATTCATTGCCACCGCGAACACCACGGCCACCATCCCCCCCGCCCTGCTGGACAGAATGGAGGTCCTCCAGGTGCCAGGGTACACTCAGGAGGAGAAGGTGGAAATCGCCCATCGGCACCTGATCCCTCATCAGCTGGAGCAGCACGGACTGACCCCGCAGCAGCTGCAGATCCCACAGGACACCACACTGCAGATCATCAGcaaGTACACACGGGAGGCTGGCGTTCGCTCTCTGGAGAGGAAGATCGGGGCTGTCTGTCGAGCTGTGGCTGTGAAGGTTGCTGAAGGTCAGAAGGTCTCTAGATCAGAGGCGCCCACTGAGCAGCATGCTGAGCAGAATACAGACAGTAAGGTGGAGGATTCTGGGATTGCAGCACCTCCTGAAATGCCAATTGTCATTGACCACATTGCCCTGAAGGATATTCTTGGACCGCCTCTCTTTGAAATGGAGGTGTCTGAGCGCCTGACTCTGCCTGGGGTTGCGATTGGTCTGGCCTGGACCCCGATGGGTGGAGAGATCATGTTTGTGGAGGCCAGTCGTATGGAGGGTGAAGGTCAGCTGACTCTGACAGGTCAGCTGGGTGATGTGATGAAGGAATCCGCTCATCTAGCCATAAGCTGGCTGCGCAGCAATGCTAAGACGTACCTCCTCAATGATGGAAGTGCTGATCTTCTGGAGGGCACCGATATCCACTTGCACTTCCCAGCAGGCGCTGTCACTAAAGACGGACCCTCGGCTGGCGTTACGATAGTGACGTGTCTGGCCTCGCTGTTGAGCGGGCGACTGGTGCGGTCAGATGTGGCCATGACTGGAGAAATCACTCTGAGAGGACTGGTGCTGCCGGTGGGAGGTATAAAGGATAAAGTCCTGGCAGCGCACCGGGCCAATCTGAAACGCATCATCATCCCCAAGCGCAACGAGAAAGATTTGGAGGAGATACCGGCCAATGTGCGAGCAGACCTGGATTTTGTTCTGGCCGGCACTCTGGATGAAGTCTTGAACGCTGCCTTTGATGGAGGATTTCCCTCAGCCGTCAACCATCCACAGGTTCTAAGCAAACTCTGAGACAATCCTTGCAAGATGAGCTCATGAACTGTTTTCCTCATAGAGAAAGTTTGACACTCAGCACTTCAATTTACTTCATCTTTGAAAGATATTCAGTTTATCTTCTCTCCTTTTCTCATTGATGATTAACTTGTGATTTAATAACGTATGAGTGTTATTGACACAATTATGTTCCTGTAGAACTGACAACTACATTTAATGTTTTGAAGCAAAATGAGCTTAACCAGTGTCAAAATTCTTAAAAATAAGATTAATGTTGACAACTTTATGTTGATAAAGAATGGAAATGTCTAATTAGTATCTTTGAAGTGGAGGTTAGCAGATGACAGTGATGTTGATAGCATATGATGACAATCTAACTGTCTTTCTGAATAAATATGGACTTATAATTGATCAAA

Function

symbol description
lonp2 Predicted to enable ATP binding activity and peptidase activity. Predicted to be involved in protein processing and protein targeting to peroxisome. Predicted to act upstream of or within protein quality control for misfolded or incompletely synthesized proteins. Predicted to be located in peroxisome. Predicted to be active in peroxisomal matrix. Orthologous to human LONP2 (lon peptidase 2, peroxisomal).

GO:

id name namespace
GO:0006625 protein targeting to peroxisome biological_process
GO:0030163 protein catabolic process biological_process
GO:0016485 protein processing biological_process
GO:0016558 protein import into peroxisome matrix biological_process
GO:0006508 proteolysis biological_process
GO:0006515 protein quality control for misfolded or incompletely synthesized proteins biological_process
GO:0005777 peroxisome cellular_component
GO:0005782 peroxisomal matrix cellular_component
GO:0004176 ATP-dependent peptidase activity molecular_function
GO:0005524 ATP binding molecular_function
GO:0004252 serine-type endopeptidase activity molecular_function
GO:0016787 hydrolase activity molecular_function
GO:0008233 peptidase activity molecular_function
GO:0008236 serine-type peptidase activity molecular_function
GO:0000166 nucleotide binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-041212-1 Predicted to enable ATP binding activity and peptidase activity. Predicted to be involved in protein processing and protein targeting to peroxisome. Predicted to act upstream of or within protein quality control for misfolded or incompletely synthesized proteins. Predicted to be located in peroxisome. Predicted to be active in peroxisomal matrix. Orthologous to human LONP2 (lon peptidase 2, peroxisomal).

Ensembl:

ensembl_id ENSDARG00000101438

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00026396 True 3018 mRNA 0.51 15 18475674 18524624

Neighbor

gene id symbol gene type direction distance location
XLOC_013350 CR387935.1 coding downstream 352705 18087260 ~ 18122969 (-)
XLOC_013351 NA coding downstream 361786 18111994 ~ 18113888 (-)
XLOC_013349 NA coding downstream 688884 17777527 ~ 17786790 (-)
XLOC_013348 psme3ip1 coding downstream 751379 17707688 ~ 17724295 (-)
XLOC_013347 bbs2 coding downstream 944191 17516569 ~ 17531483 (-)
XLOC_013353 il34 coding upstream 2546 18527170 ~ 18543358 (-)
XLOC_013354 sf3b3 coding upstream 22399 18547023 ~ 18587745 (-)
XLOC_013355 BX470163.3 coding upstream 44617 18569241 ~ 18569322 (-)
XLOC_013356 BX470163.2 coding upstream 52850 18577474 ~ 18577549 (-)
XLOC_013357 BX470163.1 coding upstream 53190 18577814 ~ 18577894 (-)
XLOC_013384 BX323829.1 misc upstream 1017478 19542102 ~ 19542231 (-)
XLOC_013345 NA non-coding downstream 982968 17491321 ~ 17492706 (-)
XLOC_013329 NA non-coding downstream 2098333 16372210 ~ 16377341 (-)
XLOC_013327 NA non-coding downstream 2167737 16224790 ~ 16307937 (-)
XLOC_013358 NA non-coding upstream 104442 18629066 ~ 18634673 (-)
XLOC_013360 BX649641.5 non-coding upstream 171583 18696207 ~ 18701764 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000013_04950930_04976334 LONP2 coding CI01000013 null 4950930 ~ 4976710 (+)