XLOC_013358


Basic Information

Item Value
gene id XLOC_013358
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007129.7
NCBI id CM002902.2
chromosome length 51023478
location 18629066 ~ 18634673 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00027287
CCTGCGGCTGCTGTGGGCCTAACGGCTCGTCTGCTTCAGTGTGGTGTGCGATAAAGGACACAAAAGACCcaccattttaaacatttttattcctTACCGTAGCATTAAAGATAAAAACAGTCCATAATTACACAAAGACTGAGGTTGTGAAAGGAAAGAAAGAGCACTGACCAATAGTCACGATATCAACACTAATGAGAAGTTAATGAGAGCAAACACAGTGAGGATATGTACAGTCTGTGCTGAAGAATTCCTTCACATGAAGAACAGGATTCAACATCATTCAAGTTGATAGAGGAGTCTGTTCGGAAAAACTGTAGCCTCATTTTTATACTTCATATCAGGATTTTATGCTgccgttttattttaaatggaaaataaagCCTTGAAAAAATGTTAAGAAAACAAAGCGACGCATCAGTCGCTCAGCGTTTCTATCTTGATGATACAATCATGTGCATGATTGTGGAAAAAGCagcaaagaaaatgaaaaagcagTTAAATTTCACAGGCTCTGTAATCTTCATCTCATTCAATATTTCACAGCCTTCGCATCCTGCAAACAATTCAGCAAAGATGATACGAAGTCCAAGAAAAAGCTCTCTCAATGTGACAATAAGGATGCACAAAGACTGATAATTTAGTGCTAAGCACATTGGCAAGAGCATAAAGAAAATCAAGACTATTTGGAATTGATCTCTTCACGCAATTTGGCCTAAAGAACATTTCAAATAGTGGTGGACAATGTAGTCGTTCATAAATTGCTTTGCAGCAGGCTACAATCCTCCCGTGGCACAAAAACAAGACGAGAAACATTTCTCCTTGCCAACTAATACCATCcaggattaataaatgctttaaagaTTAATACGAGAACTTCACGAGCCAACTTATTTTCTTTAATCCAAAGACAAAAGTCGCACAACAGCAGCAaccaaaaaaaaccccaaaaaaacaGGTTTAGTCATGGGATAAAACTCTTTGGTGATGAGAGGGCAGCCATCCTACATATCCATGATATTAGAATTTCACTGTGAAATGCCCAATAATAATCCCTCAGAATAGGCTTAAATATAATAAAGCCACTGCAGCATTCGGTGTTGAATAGTATTCTGGTATACGTTCGTCCAAAGACAATTACGCTTTACTGACAATGTATAAAAGCACTTAGTGTGCCACAGGTCTGGATTTTCAAAGGGTTCAAGAGACTTTTTTCCATTGAATACAACTAGGTAGCTCTTAAAAATCAAGATCGGAGAAGGTTTTCAGGTGAGAGAGCTTTTCCCACCCTGATCCCGAAGGCACGGTGCTTCAGCTTAGCTTAAAGTAGAACAAACACGAGGATGGTGGCGCACAGGAGAAGCCGTGAATCATGTGTGGGTGGAGGACAGCTGGTGGGTAGACGATCCGTGCCCTATTTTAGAGCCCAGATTTGTGCGCGTGAATGTGTGTCAATAAATGCTCTGTAAGAAGACTAAAGGAACAATAGCATGTGTTTATGCGTCTTATAATGAGGTTAGCTGTGCTCTGGAGAAAGGATGTGTCCAGAAGCGAGGACAAGGCACGCAAGCATGTAACATGTGTGCGCATTTACACACTGAAGTAGCTGAtatgtttacattttgaaaaaaaaacaacaactactgcACCTGAATACTCGGACTAGGCCAAAGCAGAAAGCTAGAGAACAAGGGACATGATGGGAAGaaaacagaaacagtttcttGGGGAACGAATCAGGGGAAAGTTTCTCTAGGGAAACACAAAATCATCAAAATGCATTTTACCCCTTAAAACTTTCTAGTTGTATGCAAAACTTTGAGAAATCCTCTTAAGAAACAGTATTTGCTCACAAAGTGGTGATTGCAAATAAGTAGACTACCGCAGAAGTTCTTTGCTTTATTATTGAATGTTTATAAACAAAACCTCACAAAGAACTTACATTTTTTAGCGAGTGAACGCAAACTTTCACTCAATATATAGATATTTTGCAAGGCATTGAATTACAATTAGCAATAGCTCACAAAATGTTTCCTTTTATCACAATAACTGCATCACTTCTCAAAATTTGTGTTCACTCTCAAAGCACAGTTTCTCAGGGGAACGCTAACCTTTTGCAAGCCACTTCCAAATTTCTCAACACAACAAAATATTTAGAAGAGACAGCATTTCCTGCTCACCTCATATTTTTCCCTAGCATGTCCCATTTAGGGGCTCCGCAGAAAGCGCTAGGCATTCTTGCAGACGTTCTTAATCTTTCTGCTTTCCTTTTAAACAAAAGaatgtaataaattataatataaacttGATGTAAACCGACTGAACAGCAGCAAAGTAGTGTCTACATGCTTTCAAAAAAACTCAATCGATGATGTCCACCAATCTGTCAGCTAGTCTGTATCGCAAAATGACATCAGCCTTTACAATGGAATGCCTTTCGCCCTTTTTTCATCACCTAACACTATTAGATAAAGAGAGTAGTGTGCTGTAGTGTAGACCAGGAATCAAGCTCTACCACTGTTCACAGTGCATCTCTAAAACAATCACCACAGTTTTATTAGCGTCACTTTCTAAAAGTACTCCAAGTATACTGAATATATTGCTCGAGTGTGTTCACATTGGACTGTGTGTCAGTGGTTTTCAGTTTCTGGTATTGAGTATCAATCTATCCCTCCTCCTCAGAGCAGAGGAATGATCAATGCCCAAATGTGATTAGCAAAAACCAAGTGGAAAGACAAAGCTGTTGCTGTGGCACACACTAAGTCAAACTGTTAGCATGATCATCTGGACACAAACAACCAAAACTGTCCTTTAGGACAAAATAAAGCTCCATTTAACAGCAGGACTGCAACATCCCCTCAGCCATATACGTCCAGTCTAATTTCAACACTATATTGGTAGTGAAAAGACCCACCACTATGATCAAGCTTttagttaaagggacagttcatcccaAAACTTTAATTATGTCATTTGTTCATCTTTATGATACTTCAAACCATTGAGTTTTACAGacaaaaactgctttaatctgcAAAACAGCAAGGTATTTTGAAGATAAAAGTCAATCTTACAGGTTTGTGAAGACAtaatggtgagtaaattatgttttcattttttgggtgaactctcgcTTTAATGAATCACAGAGAACTACTATGGTGCACTATGGTGACCGTTGGTCTCACTCATCTAGCTGGCTATTAGACCGATGGGAAAGAGCTCCTGCATCATTACTAGTCAGCAAATGTCATAAATATGAGTTAATTCCATTCCCAGCACATAAACCTAACATGCTGTTTAGTGGTGAAACATTAGCGTTCCTTGCCAAGTCAAGTTCCTTGTCCTAGTTGAGGTACGCCTGCAAGGAAAAGCACAATTACTGGCATCTCGTCTCAAAACCACCACATCATGGAAAGATGATGCCCAGGATCCCGTCCGCTCGGGACAGCGTCGAATGGTTATAAGATCATGAAACATTACTTCTTGATCATGTTTAACAGGCACACTAAGTGTGTCAAGTGGATAATGGGTGGTTTTGTTAATGGTAGTCCATCAGTTGGTCAGTTTCTATGCACCTGGTGCCCAGATTCACTTTCCAGGAAAGACTGAGATCTTGCCAGCCTTGGCCAGCTTGTCAATGATCTGGGCCTCGTAATCGGCATCATGGACGCCTGTTTTGCGAAACTCTCCAGAATAGCGGTTCTGCTCCCAGTAGTGGTGCCAGTTTCCCCGACTGTCCGCCCCAAAACCGAATACATTCACCTGTGGAGCGAAGAACAGCACGAGCATGCCGGTAGATGGGTAACGTCCATGATGACGTGTCCAGCGGTCGTGAATATATTTG

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00027287 True 3847 lncRNA 0.40 2 18629066 18634673

Neighbor

gene id symbol gene type direction distance location
XLOC_013354 sf3b3 coding downstream 41321 18547023 ~ 18587745 (-)
XLOC_013357 BX470163.1 coding downstream 51172 18577814 ~ 18577894 (-)
XLOC_013356 BX470163.2 coding downstream 51517 18577474 ~ 18577549 (-)
XLOC_013355 BX470163.3 coding downstream 59744 18569241 ~ 18569322 (-)
XLOC_013353 il34 coding downstream 85708 18527170 ~ 18543358 (-)
XLOC_013359 aars1 coding upstream 1600 18636273 ~ 18821929 (-)
XLOC_013360 BX649641.5 coding upstream 61534 18696207 ~ 18701764 (-)
XLOC_013361 NA coding upstream 79300 18713973 ~ 18727032 (-)
XLOC_013362 NA coding upstream 109789 18744462 ~ 18749405 (-)
XLOC_013363 NA coding upstream 152711 18787384 ~ 18793265 (-)
XLOC_013384 BX323829.1 misc upstream 907429 19542102 ~ 19542231 (-)
XLOC_013351 NA non-coding downstream 515178 18111994 ~ 18113888 (-)
XLOC_013349 NA non-coding downstream 842276 17777527 ~ 17786790 (-)
XLOC_013366 NA non-coding upstream 241717 18876390 ~ 18878724 (-)

Expression


Co-expression Network